Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05540 ATGGATATGTTTACTATCAACAACTCTTGTTCTTTCTCTGAAACCTCATTGCAGAGTTCAGAGGACTCTCAGTGGATATCAATTTCCAACGACAAGTTTCGGTTAGCTGCGACTACCCCGAAGAAGCGCGCAGGGAGAAAGAAGTTCAAGGAGACTCGCCATCCGGTGTATAGAGGGGTAAGGATAAGAAACAATAATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGAACTTTTCCAACGGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGATACGCCTGTCTCAATTTTGCAGACTCAACATGGCGGCTCCCTAAACCTGCTAGTACTCAAGCAAAAGATATACAAAAGGCGGCTACGGAAGCTGCCGAGGCTTTCAGACCAAACAAGATTTTACCAACTGATGATGTGGAAGAGATTTTAATGACTAATGATGTTGACATTGAAATCTCTGTAGCTGCCTCTGCCACAGTGGAGCAGATTTTGCAGTGCATGGTAGAGGAAGAAGACCGAGTGATGAGCATGCCAGAGATGTGGAGGAGCATGGCACTAATGTCTCCAACACATAGTTTTGGGTATCATGATGAGTATCAATATATTGATGAACAAGACTATCAAGATCAAGAGGTGTCACTATGGACTTATTAA 693 0.4444 MDMFTINNSCSFSETSLQSSEDSQWISISNDKFRLAATTPKKRAGRKKFKETRHPVYRGVRIRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSTWRLPKPASTQAKDIQKAATEAAEAFRPNKILPTDDVEEILMTNDVDIEISVAASATVEQILQCMVEEEDRVMSMPEMWRSMALMSPTHSFGYHDEYQYIDEQDYQDQEVSLWTY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05540 230 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Vivi2g05540 230 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Vivi2g05540 230 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Vivi2g05540 230 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Vivi2g05540 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 230 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05540 Vivi-Chr2 181839878 181840637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05540 6 230 AP2-EREBP Transcription Factor Family AT4G25470 49.345 4.16e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05540 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05540 - - psat:127115660 337.421