Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05538 ATGGTTCCCTATATATACAACACCTTACTCTTCACAATCCTTACACCTTCAGCCTTCAATTTCACTATCAAAACCTTTGTCTACTCTCTCCAACACACAATCATGTTTCCAACTAACAACCCTTCCACTTCTTCAAAACCTTCATCTTCCTCCAGGATATCTTTGCCAAATTTAGAAATCTCTCATGAGATGCCAGTTTTCAACGAGGAAGTGCGATTAGCTGCGAGTACACCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGAAGAAGGAACTTAGATAAGTGGGTGTGTGAAATGAGGGAGCCGTACAAGAAGACTAAAATTTGGTTAGGGACTTTTCAGACTGCCGAGATGGCTGCCCGAGCCCATGATGTAGCAGCCTTGGCATTGAGAGGTCGCAACGCCTGTCTCAACTTTGCAGACTCGGCGTGGCGACTTCCTGTTCCTGCAACTACCGAGACAAAAGATATACAAAAGGCGGCTGCACAAGCTGCCGAGGCTTTCAGACCAGACAAGATTTTCTTACCAGATAAGGCTTTAAATTCTAATGTTATTGACACTTCTGTAGCCACCTCCGCTGCCACAGAGGAGCAGTTTATGTTTCATATGGAAGAAGATGAAGAGAAGGAAGTGTTGAACATTCCTGATTCCTTGAGGAATATGGCGCTGCTGTCCCCTACACATAGCTTGGGGCCTGAGTTTGAGTATCAAGATATTAATACAGACTTTGAAGATGTTGAGGTGTCACTGTGGAGTTTTTCTCTTTAA 801 0.4507 MVPYIYNTLLFTILTPSAFNFTIKTFVYSLQHTIMFPTNNPSTSSKPSSSSRISLPNLEISHEMPVFNEEVRLAASTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPYKKTKIWLGTFQTAEMAARAHDVAALALRGRNACLNFADSAWRLPVPATTETKDIQKAAAQAAEAFRPDKIFLPDKALNSNVIDTSVATSAATEEQFMFHMEEDEEKEVLNIPDSLRNMALLSPTHSLGPEFEYQDINTDFEDVEVSLWSFSL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05538 266 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Vivi2g05538 266 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Vivi2g05538 266 SUPERFAMILY DNA-binding domain 94 153 IPR016177 GO:0003677
Vivi2g05538 266 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Vivi2g05538 266 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Vivi2g05538 266 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Vivi2g05538 266 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Vivi2g05538 266 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Vivi2g05538 266 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 45 263 IPR045277 GO:0003700
Vivi2g05538 266 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05538 Vivi-Chr2 181688372 181689450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05538 72 264 AP2-EREBP Transcription Factor Family AT4G25470 55.838 2.25e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05538 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05538 - - psat:127130221 413.69