Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05537 ATGTTTCCAACTAACAACCCCTCCACTTCCTCACAACCCAGTTCTTCAAAACCTTCAACTTTAGAAATCTCTATGGAGGTGCCAGTTTTCAACGAGGAGGTGCGATTAGCTGCGAGTACACCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCAGTGTTCAGGGGTGTGAGAAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAAATTTGGCTAGGAACTTTTCCGACGGCCGAGATGGCAGCCCGAGCCCATGATGTTGCAGCCTTGGCATTGAGAGGTTGCAACGCCTGTCTCAACTTTGCAGACTCGGCCTGGCGACTCCCTGTTCCTGCCACTACTGCAACAAAAGATTTACAAAAGACAGCTGCACAAGCTGCCGAGGCTTTCAGACCAGATAAGATTTTCATATCAAATAAGGTTTTAACCACTAATGATATTGACACTGCTGTAGCCACCTCCGCTGCCACAGAGGAGCAGCTTATGTTTTGTATGGAAGAAGATGAAGAGAAGGAAGTGTTGAACATTCCAGATTCATTAAGGAATATGGCGCTGCTGTCTCCAACACATAGTTTGGGGCATGAGTTTGAGTATCAAGATATTAATACAGACTTTGAAGATGTTGAGTTGTCACTATGGAGTTTTTCTCTTTGA 690 0.4565 MFPTNNPSTSSQPSSSKPSTLEISMEVPVFNEEVRLAASTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGCNACLNFADSAWRLPVPATTATKDLQKTAAQAAEAFRPDKIFISNKVLTTNDIDTAVATSAATEEQLMFCMEEDEEKEVLNIPDSLRNMALLSPTHSLGHEFEYQDINTDFEDVELSLWSFSL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05537 229 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Vivi2g05537 229 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Vivi2g05537 229 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g05537 229 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 226 IPR045277 GO:0003700
Vivi2g05537 229 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Vivi2g05537 229 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05537 Vivi-Chr2 181634330 181635378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05537 35 227 AP2-EREBP Transcription Factor Family AT5G51990 52.261 1.90e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05537 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05537 - - psat:127130221 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05537 2 181634330 181635378 Vivi1g04312 1 91823885 91825094 ECH
Vivi2g05537 2 181634330 181635378 Vivi2g05537 2 181634330 181635378 ECH
Vivi2g05537 2 181634330 181635378 Vivi1g04312 1 91823885 91825094 PCT