Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05534 ATGGACTGTGATAGATCTAATATTACAGTTTTGATTGTCGATCATGATGATTTTTCTTTAGAATATCTTTCTAATATACTCATGGCATGGAAATATCAAGTTCAAACTGCCAAGACTGCTCATCAAGCTTTGGTCACTCTCCAAGACTCTGAAGGCTTGTTGGATCTTATAATTTCAGAGTTATCTATGTTAGGAGGAGTGAATGGCTTTGATTTTTTAAAGCTTATTAAAAATCAATTCCATATACCTGTAATAATGATGTCCAAAGAAAACAACATGAATTTAATCTCCAAGTCTCTAGAAAATGGAGCAGCACAATTTATTGCAAAACCCTTTTGTGCAGAAGACTTCAAAGATATTTGGAAACATGTTTTGGATGCAAAAAAAGAGAAACTTTTTGTTGAAAGTTTATTCGTAAAAAGTGATGAGCAAGAGATAAAGAGTCATGAAACTAAGACAAAAAAGAAGGGTTGCAAGAGAAAGTGTAGTGATGAATATCAAGGAGAAGAAGAATCTCAAGTTGTTAAGAAACCAAAACTTGTTTGGACAACTTACCTTCACAATCTTTTTCTCATTGCCATTAAGCAAATTGGATTGGACAAGGCTGTACCAAAGAAAATTTTGGATATTATGAATATTCCAAACTTAACAAGAGAAAATGTTGCAAGCCACCTACAGAAGTATCGCATATTTTTACGCGATGTTGCCGAGAAAGGAATGGTTGGAGGAATATCTCATAGAGCTCTAAGGTCAAGATTCGCATCAAGTCTACCAACGTCATTGGTTAAAGAATTTCAAACCATAAGGACAAATAAGCTTCGTATAGCAACACCAGAATATTTACAAACATTATCGTATCAAGCAAGAGATGAAAACATTACTCTTAACCCTTATAATCGATTTCCAACACATCGTGTTGATCGGTTCCCTTATGTACAAAAAGGGCTAACTCTTCAAGATTCAAACAAGGTTAGACTTGGAAAATCACAACTGGAAACTAGTTTTGTGAACAATAATGTCCATGATCAAAACATGTTTGGAGTAAACTCCTCAAGCCTTTCATTATTCAATAATGGTGCTTCAACTAGTTTGTCATCCTATGGAAGTGGACAAGGATTTAGGCCTTATTCCTCATCTTTCATAACAAGGGATTTGAAATTTGGTGACATTAGTTACCAAAATCATGGCTCTATGGGAATTGAATCTTTTAATCATATCAACCATGGTGTGAAAAATCAAAACTTGGGATCTTTGAGAAGTTCTAATATCTTGCCTCAAAATGTTGCTTATGATCCAAGAAACAACAAAAACCCTTTTGGAATTCAAATCAACAATGGATTAGAAACGGTTGGAATTGAGACTATGAATATAAGAGGGTTTAATAGTGTTGGAAAAAGGGTTGATACTACAAATAACAATAGTTTTGGCTTGAATAATAATAAGAGTCAAAATAAAAATATGAATGGGAATATTGTGGAAAATGAAAGGAAATATAATGGTTCTACTTTCATCAATAAGAAGGCAGAGTTCAACCAAATGGAGTTTAACCGTCCTGATATTTTGATAGCTAATGACAAGAATCTTCTTAATAAGAAGAATGAGAATCTTGATTCATGTGGATTTTTGAAATCGACCCTCTATAATTCTCTTGAATACATGCAACCTCTAGAGAAGCTATATAAAGGTGGTGATTGTATCTCTCCTCCAGCTGAGACCACATCTTGTGTGCTGAACGAGTCATCAATAAATTCAGATCAAAATTCTAATAAGGTGCAAGTACAAGAAGGATATTCAAATGGAGAACCATATGATAGATTCATGGAAGAAAATGTGTCTAAAACAAGTACATCGACTATCGATCCAGAATTGAATATGGATCTTATTGAAACTCTGTTTGGTACTATAGAAAACTAG 1914 0.3365 MDCDRSNITVLIVDHDDFSLEYLSNILMAWKYQVQTAKTAHQALVTLQDSEGLLDLIISELSMLGGVNGFDFLKLIKNQFHIPVIMMSKENNMNLISKSLENGAAQFIAKPFCAEDFKDIWKHVLDAKKEKLFVESLFVKSDEQEIKSHETKTKKKGCKRKCSDEYQGEEESQVVKKPKLVWTTYLHNLFLIAIKQIGLDKAVPKKILDIMNIPNLTRENVASHLQKYRIFLRDVAEKGMVGGISHRALRSRFASSLPTSLVKEFQTIRTNKLRIATPEYLQTLSYQARDENITLNPYNRFPTHRVDRFPYVQKGLTLQDSNKVRLGKSQLETSFVNNNVHDQNMFGVNSSSLSLFNNGASTSLSSYGSGQGFRPYSSSFITRDLKFGDISYQNHGSMGIESFNHINHGVKNQNLGSLRSSNILPQNVAYDPRNNKNPFGIQINNGLETVGIETMNIRGFNSVGKRVDTTNNNSFGLNNNKSQNKNMNGNIVENERKYNGSTFINKKAEFNQMEFNRPDILIANDKNLLNKKNENLDSCGFLKSTLYNSLEYMQPLEKLYKGGDCISPPAETTSCVLNESSINSDQNSNKVQVQEGYSNGEPYDRFMEENVSKTSTSTIDPELNMDLIETLFGTIEN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05534 637 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 352 IPR045279 GO:0009736
Vivi2g05534 637 Pfam Response regulator receiver domain 10 118 IPR001789 GO:0000160
Vivi2g05534 637 SUPERFAMILY Homeodomain-like 175 234 IPR009057 -
Vivi2g05534 637 SMART REC_2 8 121 IPR001789 GO:0000160
Vivi2g05534 637 SUPERFAMILY CheY-like 6 127 IPR011006 -
Vivi2g05534 637 Gene3D - 6 141 - -
Vivi2g05534 637 Gene3D - 174 234 - -
Vivi2g05534 637 FunFam Two-component response regulator 173 236 - -
Vivi2g05534 637 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Vivi2g05534 637 NCBIfam myb-like DNA-binding domain, SHAQKYF class 177 230 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05534 Vivi-Chr2 181526088 181530636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05534 8 253 Response Regulator Gene Family AT5G07210 39.931 9.14e-44 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g05534 Response_reg 6.3e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05534 - K14491 vvo:131650799 1226.85