Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05493 ATGACAAATCAACGATCTTCCTTCAGCTACGACGTTTTCATAACCTTCTCCGGCGACGATACTCGTTACGGTTTCGCCGGCAATCTCTGGAAATCTCTCAGTAACAGAGGAATCCACACATTCATCGATGACCATGAAGAGGACCTTTCCAAAGGAAATGGGATCGAATCAACACTTTTGAATGTGATCAATGAGTCAAGAACTGCCATTATTGTGTTTTCTAACAATTATGCTTTTTCATCCTTTTGCTTGGAACTTCTTGTCTATATCCTTGACAGTTTTCTCTTGAATCATCGGTTTATTTTCCCTGTTTTTTACGATGTCGATCCTGCTGTTGTAAGGTATCAAAGTGGAACTTATGGTGAAGCTTTTTCAAAGCATGAGAAGAAATTGAAAGATAACAAAGAGAAAGTTAAGAAATGGAGGAGAGCTTTATATCAAGTAGCTAACTTGTCTGGATTTCATTTCAAACATGGGGATGGATATGAATTTGAGTTTATTGAGAGGATTGTGGAAGAAGTCTCCAGTAAGTTTGATCTTGTTCCTGTACATATTGCTAATTACACGGTCGGATTGGAGTCTCAATTGGAAGAAGTGTGTTCACTTTTAGAGTTGGGATCAAAACAAGTCCTTACAGTGGGGATCTATGGGGTTGGCGGAATAGGTAAAACAGTACTTGCTCGAGCTGTTTATAATAAGATCGGAGACCAATTTGAAGCTTTATGTTTTCTTGCCAATGTTAGTGAGAATTCAAATTTGCATGGACTAGTGCACCTCCAGAATAGGCTTCTTTCAGAAATGGTTGGATTGAATGATATTCAGTCAGGAAGTGCTAGTAAAGGAGTTTCAGTAGTAAAGTATAGGCTCCGTCGAAAAAAAGTTCTTCTTATCCTTGATGATGTTGACACACTTGAGCAACTAGAGACCTTGGTTGGAGGACTTGATTGGTTTGGTCCTGGTAGCAGAGTTATCATTACAACACGGGACAAACATTTGCTAGCATTTCACGGGTTTGAAAGAATATATGAGGTACAAGAGTTGAATGATGTAGACGCTCTTGAGTTGCTTAGCCACAGGGTTTTTAAACAAGGCGTCGTTGATCCCAATTACACAGAACTTTTAAGCCGAGTAGTAACTTACGCTTCCGGGATTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTGACCAATGGAAACATACATTAGATCGGTTTGAACGAAATCCTCCCAACGAAATCCGTAATATTCTTAGAATAAGCTTTGATGATTTGGATCAAGAGGAGAAGAACGTTTTTCTAGATATCACTTGTTGCTTCAAAGGATATGAATTGACAGATGTTGAAGATATTCTCCATGCTCGTTATGGTCAAGACATGAAATATCATATTGAAGCGTTGATTGACAAGTCTCTCATACGTATCAGTTTGGATGGTAAGGTGACACCACATCCCTTGATAGAGAGAACAGGTAAAGAAATTGTCCATGACGAATCACCAAGCGATCCTGGGAGACGTAGTAGATTATGGTTCCGAGAAGATATAGTTCAAGTCCTAAAAAATAATAAGGGAACTAGTAATATTGAAATCATACATCTAGATTCCCTCTTAATTGAAAATGAAGAAGCAATAGAATGGGATGGAGAGGCCTTTGAGGAGATGCCAAACCTCAGAATACTTATTATTAGAAAATGTCATTTCTCCAAAGCTCCCAAGTATCTTCCAAACAGTTTAAAGGTATTGGAATGGTGGAGATATCCTTCTGAGGAGTTACCATCTGATTTTGATTCAAAGAAACTTGTTATATGCAAGCTACCAAACATGGCTTCATGTCATCCGATCTAA 1857 0.385 MTNQRSSFSYDVFITFSGDDTRYGFAGNLWKSLSNRGIHTFIDDHEEDLSKGNGIESTLLNVINESRTAIIVFSNNYAFSSFCLELLVYILDSFLLNHRFIFPVFYDVDPAVVRYQSGTYGEAFSKHEKKLKDNKEKVKKWRRALYQVANLSGFHFKHGDGYEFEFIERIVEEVSSKFDLVPVHIANYTVGLESQLEEVCSLLELGSKQVLTVGIYGVGGIGKTVLARAVYNKIGDQFEALCFLANVSENSNLHGLVHLQNRLLSEMVGLNDIQSGSASKGVSVVKYRLRRKKVLLILDDVDTLEQLETLVGGLDWFGPGSRVIITTRDKHLLAFHGFERIYEVQELNDVDALELLSHRVFKQGVVDPNYTELLSRVVTYASGIPLALEVIGSNLFGKSVDQWKHTLDRFERNPPNEIRNILRISFDDLDQEEKNVFLDITCCFKGYELTDVEDILHARYGQDMKYHIEALIDKSLIRISLDGKVTPHPLIERTGKEIVHDESPSDPGRRSRLWFREDIVQVLKNNKGTSNIEIIHLDSLLIENEEAIEWDGEAFEEMPNLRILIIRKCHFSKAPKYLPNSLKVLEWWRYPSEELPSDFDSKKLVICKLPNMASCHPI 618
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05493 618 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Vivi2g05493 618 Gene3D - 4 181 IPR035897 -
Vivi2g05493 618 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 611 IPR044974 GO:0006952
Vivi2g05493 618 Gene3D - 182 338 IPR027417 -
Vivi2g05493 618 Gene3D Ribonuclease Inhibitor 512 615 IPR032675 -
Vivi2g05493 618 Coils Coil 124 144 - -
Vivi2g05493 618 Pfam NB-ARC domain 195 424 IPR002182 GO:0043531
Vivi2g05493 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Vivi2g05493 618 Pfam TIR domain 10 177 IPR000157 GO:0007165
Vivi2g05493 618 SMART AAA_5 209 347 IPR003593 GO:0016887
Vivi2g05493 618 SMART till_3 9 151 IPR000157 GO:0007165
Vivi2g05493 618 SUPERFAMILY "Winged helix" DNA-binding domain 416 524 IPR036390 -
Vivi2g05493 618 Gene3D - 346 430 IPR042197 -
Vivi2g05493 618 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 180 - -
Vivi2g05493 618 ProSiteProfiles TIR domain profile. 8 178 IPR000157 GO:0007165
Vivi2g05493 618 PRINTS Disease resistance protein signature 556 572 - -
Vivi2g05493 618 PRINTS Disease resistance protein signature 381 395 - -
Vivi2g05493 618 PRINTS Disease resistance protein signature 212 227 - -
Vivi2g05493 618 PRINTS Disease resistance protein signature 288 302 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g05493 Vivi-Chr2 180639671 180642377 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05493 6 615 WRKY Transcription Factor Family AT4G12020 31.270 3.35e-70 246
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05493 - - psat:127132333 1083.94