LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05493	ATGACAAATCAACGATCTTCCTTCAGCTACGACGTTTTCATAACCTTCTCCGGCGACGATACTCGTTACGGTTTCGCCGGCAATCTCTGGAAATCTCTCAGTAACAGAGGAATCCACACATTCATCGATGACCATGAAGAGGACCTTTCCAAAGGAAATGGGATCGAATCAACACTTTTGAATGTGATCAATGAGTCAAGAACTGCCATTATTGTGTTTTCTAACAATTATGCTTTTTCATCCTTTTGCTTGGAACTTCTTGTCTATATCCTTGACAGTTTTCTCTTGAATCATCGGTTTATTTTCCCTGTTTTTTACGATGTCGATCCTGCTGTTGTAAGGTATCAAAGTGGAACTTATGGTGAAGCTTTTTCAAAGCATGAGAAGAAATTGAAAGATAACAAAGAGAAAGTTAAGAAATGGAGGAGAGCTTTATATCAAGTAGCTAACTTGTCTGGATTTCATTTCAAACATGGGGATGGATATGAATTTGAGTTTATTGAGAGGATTGTGGAAGAAGTCTCCAGTAAGTTTGATCTTGTTCCTGTACATATTGCTAATTACACGGTCGGATTGGAGTCTCAATTGGAAGAAGTGTGTTCACTTTTAGAGTTGGGATCAAAACAAGTCCTTACAGTGGGGATCTATGGGGTTGGCGGAATAGGTAAAACAGTACTTGCTCGAGCTGTTTATAATAAGATCGGAGACCAATTTGAAGCTTTATGTTTTCTTGCCAATGTTAGTGAGAATTCAAATTTGCATGGACTAGTGCACCTCCAGAATAGGCTTCTTTCAGAAATGGTTGGATTGAATGATATTCAGTCAGGAAGTGCTAGTAAAGGAGTTTCAGTAGTAAAGTATAGGCTCCGTCGAAAAAAAGTTCTTCTTATCCTTGATGATGTTGACACACTTGAGCAACTAGAGACCTTGGTTGGAGGACTTGATTGGTTTGGTCCTGGTAGCAGAGTTATCATTACAACACGGGACAAACATTTGCTAGCATTTCACGGGTTTGAAAGAATATATGAGGTACAAGAGTTGAATGATGTAGACGCTCTTGAGTTGCTTAGCCACAGGGTTTTTAAACAAGGCGTCGTTGATCCCAATTACACAGAACTTTTAAGCCGAGTAGTAACTTACGCTTCCGGGATTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTGACCAATGGAAACATACATTAGATCGGTTTGAACGAAATCCTCCCAACGAAATCCGTAATATTCTTAGAATAAGCTTTGATGATTTGGATCAAGAGGAGAAGAACGTTTTTCTAGATATCACTTGTTGCTTCAAAGGATATGAATTGACAGATGTTGAAGATATTCTCCATGCTCGTTATGGTCAAGACATGAAATATCATATTGAAGCGTTGATTGACAAGTCTCTCATACGTATCAGTTTGGATGGTAAGGTGACACCACATCCCTTGATAGAGAGAACAGGTAAAGAAATTGTCCATGACGAATCACCAAGCGATCCTGGGAGACGTAGTAGATTATGGTTCCGAGAAGATATAGTTCAAGTCCTAAAAAATAATAAGGGAACTAGTAATATTGAAATCATACATCTAGATTCCCTCTTAATTGAAAATGAAGAAGCAATAGAATGGGATGGAGAGGCCTTTGAGGAGATGCCAAACCTCAGAATACTTATTATTAGAAAATGTCATTTCTCCAAAGCTCCCAAGTATCTTCCAAACAGTTTAAAGGTATTGGAATGGTGGAGATATCCTTCTGAGGAGTTACCATCTGATTTTGATTCAAAGAAACTTGTTATATGCAAGCTACCAAACATGGCTTCATGTCATCCGATCTAA	1857	0.385	MTNQRSSFSYDVFITFSGDDTRYGFAGNLWKSLSNRGIHTFIDDHEEDLSKGNGIESTLLNVINESRTAIIVFSNNYAFSSFCLELLVYILDSFLLNHRFIFPVFYDVDPAVVRYQSGTYGEAFSKHEKKLKDNKEKVKKWRRALYQVANLSGFHFKHGDGYEFEFIERIVEEVSSKFDLVPVHIANYTVGLESQLEEVCSLLELGSKQVLTVGIYGVGGIGKTVLARAVYNKIGDQFEALCFLANVSENSNLHGLVHLQNRLLSEMVGLNDIQSGSASKGVSVVKYRLRRKKVLLILDDVDTLEQLETLVGGLDWFGPGSRVIITTRDKHLLAFHGFERIYEVQELNDVDALELLSHRVFKQGVVDPNYTELLSRVVTYASGIPLALEVIGSNLFGKSVDQWKHTLDRFERNPPNEIRNILRISFDDLDQEEKNVFLDITCCFKGYELTDVEDILHARYGQDMKYHIEALIDKSLIRISLDGKVTPHPLIERTGKEIVHDESPSDPGRRSRLWFREDIVQVLKNNKGTSNIEIIHLDSLLIENEEAIEWDGEAFEEMPNLRILIIRKCHFSKAPKYLPNSLKVLEWWRYPSEELPSDFDSKKLVICKLPNMASCHPI	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05493	618	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	154	IPR035897	-
	Vivi2g05493	618	Gene3D	-	4	181	IPR035897	-
	Vivi2g05493	618	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	611	IPR044974	GO:0006952
	Vivi2g05493	618	Gene3D	-	182	338	IPR027417	-
	Vivi2g05493	618	Gene3D	Ribonuclease Inhibitor	512	615	IPR032675	-
	Vivi2g05493	618	Coils	Coil	124	144	-	-
	Vivi2g05493	618	Pfam	NB-ARC domain	195	424	IPR002182	GO:0043531
	Vivi2g05493	618	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	440	IPR027417	-
	Vivi2g05493	618	Pfam	TIR domain	10	177	IPR000157	GO:0007165
	Vivi2g05493	618	SMART	AAA_5	209	347	IPR003593	GO:0016887
	Vivi2g05493	618	SMART	till_3	9	151	IPR000157	GO:0007165
	Vivi2g05493	618	SUPERFAMILY	"Winged helix" DNA-binding domain	416	524	IPR036390	-
	Vivi2g05493	618	Gene3D	-	346	430	IPR042197	-
	Vivi2g05493	618	FunFam	Disease resistance protein (TIR-NBS-LRR class)	6	180	-	-
	Vivi2g05493	618	ProSiteProfiles	TIR domain profile.	8	178	IPR000157	GO:0007165
	Vivi2g05493	618	PRINTS	Disease resistance protein signature	556	572	-	-
	Vivi2g05493	618	PRINTS	Disease resistance protein signature	381	395	-	-
	Vivi2g05493	618	PRINTS	Disease resistance protein signature	212	227	-	-
	Vivi2g05493	618	PRINTS	Disease resistance protein signature	288	302	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05493	Vivi-Chr2	180639671	180642377	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05493	6	615	WRKY Transcription Factor Family	AT4G12020	31.270	3.35e-70	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05493	-		-	psat:127132333	1083.94