Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05490 ATGGGTTTCCTCCGGCGACTTTTCGGCGGCAAAAAACACCACAATCCTCCGCCGGAAACCACCGCAAAAAAAGACAAGAAAACCTGGACCTTAGCCAAAAACTCCAGAAGAGACAAAACCAACTCACTCTCGTTGAATAACCACAAAAATACTGACTCTTCCGCTTCTCTTTCCGAAAACTATGATGCCAATAAACATGCAATTGCTGTAGCCGCCGCTACCGCCGCCGTAGCCGAAGCTGCACTCGCCGCCGCTCATGCTGCCGCCGAGGTTGTCAGACTGACGAGTAACACCGATTCCGAACATTCTGCGGTTACACCAAAAACTCCGAAGACTGGCCGGAGACGCTCGCCGGCGGAAGTTGATGCCGCCGTGAAGTTACAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCATTAAGAGCACTTAAAGCATTGGTGAAATTGCAAGCTTTGGTGAGAGGTCACATTGTAAGAAAGCAAACTGCGGATATGCTAAGACGAATGCAAACATTGGTGCGACTTCAGTCGCGTGCACGCGCAAGTCGCATGCACGTGTCTGATAGTATGCACTCTTTCAAGTCTTCACTTTCTCGAAATCCTGTCCCTGATGATTATGAGCACCGACTCCGTGTCTATAGGACGAAATTTGACGGATCCTCCATCCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACATGAACTTAGAACGAGCCCGATTCGGTTCGAATTGGTTAGACGGTTGGATGGATGAAAACACATGGAGCCAAGCCGGAGACACTTCATCGAAAATCATACATCTTGATGATGAAAAGAGTGATAAAATTCTTGAAGTAGATACTTGGAAGCCACATTTGAAATCACACCATAGTACTAGCACATCTTTTCAACATCATCATTCATCTTGTGATTACAATAATGAGAATTTTACAGTACACGAGTCACCGTCGAAACGTTCGCTCAAACCTCACAGTTCAAGTCTCTCTTCTATGAAACATCAAAAAGATAAAGAAGAAGTAGCTTCATCACGAACGACCGATTATAGTCCTCAAGCGCTCTCAGCTTCTTCTAGACTCGAAAGTGGTTTGAGGAGAGGTCCTTTCACGCCAACTAAAAGTGAGTCTTCATGGAGTTTTTTCAATGGTTACTCTGGTTGTCCTAGTTATATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGAAACAGTGTTTCAACTACAAGATCTATTCAAGGTCTTTGA 1284 0.4533 MGFLRRLFGGKKHHNPPPETTAKKDKKTWTLAKNSRRDKTNSLSLNNHKNTDSSASLSENYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTDSEHSAVTPKTPKTGRRRSPAEVDAAVKLQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRMHVSDSMHSFKSSLSRNPVPDDYEHRLRVYRTKFDGSSILKRCSSNANFRDMNLERARFGSNWLDGWMDENTWSQAGDTSSKIIHLDDEKSDKILEVDTWKPHLKSHHSTSTSFQHHHSSCDYNNENFTVHESPSKRSLKPHSSSLSSMKHQKDKEEVASSRTTDYSPQALSASSRLESGLRRGPFTPTKSESSWSFFNGYSGCPSYMANTQSSRAKVRSQSAPRQRLEFERNSVSTTRSIQGL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05490 427 MobiDBLite consensus disorder prediction 95 120 - -
Vivi2g05490 427 MobiDBLite consensus disorder prediction 308 374 - -
Vivi2g05490 427 MobiDBLite consensus disorder prediction 391 427 - -
Vivi2g05490 427 SMART iq_5 119 141 IPR000048 GO:0005515
Vivi2g05490 427 SMART iq_5 142 163 IPR000048 GO:0005515
Vivi2g05490 427 MobiDBLite consensus disorder prediction 35 57 - -
Vivi2g05490 427 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Vivi2g05490 427 Pfam IQ calmodulin-binding motif 122 141 IPR000048 GO:0005515
Vivi2g05490 427 PANTHER IQ-DOMAIN 5-RELATED 32 414 - -
Vivi2g05490 427 MobiDBLite consensus disorder prediction 12 34 - -
Vivi2g05490 427 MobiDBLite consensus disorder prediction 345 359 - -
Vivi2g05490 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 165 IPR027417 -
Vivi2g05490 427 Pfam Protein of unknown function (DUF4005) 350 417 IPR025064 -
Vivi2g05490 427 Gene3D - 119 173 - -
Vivi2g05490 427 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Vivi2g05490 427 MobiDBLite consensus disorder prediction 330 344 - -
Vivi2g05490 427 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Vivi2g05490 427 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05490 Vivi-Chr2 180602693 180605722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05490 1 426 IQD Protein Family AT5G62070 44.368 6.99e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05490 - - gmx:100785181 486.493