Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05486 ATGCAATTAATGTTGATGGGAGGTCACAAACACCTTTCTAGTCTCGCCGAAGTTATTCTCAGGAACATTGATGCTTGCAAACCACTTTCTAACATTACTCAGACTTCTCTTGGCCCGAATGGTATGAATCAAATGGCATATAAAAATTCTTTGCCCAATGCATTGTTGGCTTCAACGGTTCAAACAGCATGGGAGGATATCCCATATTCACCCTTCCTTGTTACACAATCAATGCTTGCAAAATATAGTAACATGGCTTCATCAATTGGTGGTCCTAATATGAACATGTCAGAGGCTTTAAGGGCAAACAACATTTCTATGCCTCAAGCTCAACCCAGTCAACATGCTTTGCCCTGGTATTGCCACTGGACCTCACTTCCTCAACGAATTGCTGTGCATCCCTACTCGCAACCTACTCTTCCTTTTGGGCATTTTACGGATAATGGTGCTGCAACACCAGCTGGGTTGGTAGCTGCTTCACTGTCACATGCTTTTGCTCTTTTTGTTGCTGTTTCTGCTGGTGCTAATATCTCTGATGGACATATTACACTTGTTAGAGGTCTTCTGTATTGGATTGCTCAGTTGCTTGGTTCTGTTGTTGCTTGTTTGCTCCTTAATATTGCCATTGGTGGATGGGAAACGTCCGCATTCTCATTATCTTCTGGAGTAGGAGCAACAAATGCACTTGTATTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCAACTGCAATAGATCCAAAGAATGGTAGTCTTGGAACAATTGCTCCATTCGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGCAGATGAAGATATTCAAAGAACATCAAGTGAATTCCCTAGTATACAGTATCTCTGGTGA 876 0.4155 MQLMLMGGHKHLSSLAEVILRNIDACKPLSNITQTSLGPNGMNQMAYKNSLPNALLASTVQTAWEDIPYSPFLVTQSMLAKYSNMASSIGGPNMNMSEALRANNISMPQAQPSQHALPWYCHWTSLPQRIAVHPYSQPTLPFGHFTDNGAATPAGLVAASLSHAFALFVAVSAGANISDGHITLVRGLLYWIAQLLGSVVACLLLNIAIGGWETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPFAIGFIVGANILADEDIQRTSSEFPSIQYLW 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05486 291 PRINTS Major intrinsic protein family signature 186 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05486 291 PRINTS Major intrinsic protein family signature 231 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05486 291 PANTHER AQUAPORIN-8 142 276 IPR034294 -
Vivi2g05486 291 Gene3D Glycerol uptake facilitator protein. 139 281 IPR023271 -
Vivi2g05486 291 Gene3D - 1 85 IPR027413 -
Vivi2g05486 291 SUPERFAMILY Aquaporin-like 147 273 IPR023271 -
Vivi2g05486 291 Pfam Major intrinsic protein 151 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05486 291 SUPERFAMILY GroEL equatorial domain-like 11 49 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05486 Vivi-Chr2 180561542 180563434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05486 130 289 Major Intrinsic Protein MIP AT3G26520 63.218 1.65e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05486 K09873 - vvo:131635378 213.001