Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05484 ATGGACAGGAATGGTCAGATGGGTTTGATTGGAGAGAATTTTGAGTCTGGTTTGCTAGGGAGGATGAGGGAAGATGAGTACGAAAGTAGGTCTGGAAGCGAAAATTTTGACGGCGGTTCGGGCGATGAACTCGATGCTGGCGATGATCAGCCAAGGAGTAAGAAGAAGAAGTATCATCGACACACTCCTCAACAGATTCAGGAGCTCGAAACGTTCTTCAAGGAGTGTCCTCATCCCGATGAGAAGCAAAGATCTGATCTTAGCAAGAAGCTCGGCTTGGAGATCAAGCAAGTCAAATTCTGGTTTCAGAATCGGCGAACTCAGATGAAGACACAAATGGAACGCCATGAGAACATGATTCTGAAGCAGGAGAATGACAAGCTCAGGGCGGAGAACAGTCTGATGAAAGACGCAATGGCCAACCCAATCTGCAGCAGCTGCGGTGGCCCAGCAATTCCGGGTCAAATTTCAATGGAGGAACACCAGATTCGAATTGAGAATGCTCGACTGAAGGAGGAATTGTCCCGAGTCTGTACCTTGTCCAACAAGTTTCTCGGCCGTCCACTCTCGCCACTGGCCCCCATATCCATGCAGACTCAGAATCCTGGTCTTGACTTTGGTATGGGAAGGAACGGTGTTGGTTGTCCAAGCAATTTCAACATGTCGCTCCCGATGGGTTTTGATATGGGAGACGGGGTTATGGGAACTCCACCCCCATATCCTGGATCTCGAACACCGATGGGCATGATGGTAAATGATGCTCAGCAGGAGAGATCCATGCTTTATGAACTCGCATTTGCTGCAATGGATGAGCTGATCAAGATGTCTCAGCCGGATTCCCCTCTCTGGATTAAGGCTTCAGATGGCACAACGGAAGTGCTTAATCATGAGGAGTACGCAAGAATTGGTTCTCCCTTTAACGATCCAAAACCTACTGGTTTTGTAACTGAGGCGTCAAGAGAAACAGGACAGCTATTCATCAGCAGTGCTGCCCTTGTGGGAACAATGCTGGATGCGGATCGGTGGGCAGAGATGTTTCCGTGTATGATTGCTCGAGCACAAACCTTGGATGTGATATCCAATGGTATGGATGGAAGCAGAAATGGATCTATTCAAGTGATGCAAGCTGAGATTCAATTGCCTTCTCCATTAGTCCCTGTGCGACAATACACTTTCCTAAGGTATTGCAAGCAGCATGCGGAAGGTGTGTGGGTTGTGGTCGATGTTTCGATCGACATCAATGCTAATTCTGCCAATGGAAACCCTTTCATGAGTTGCAAGAGACTTCCTTCTGGATGCATTTTGCAAGATATGAATGGTTTTTGCAATGTTACTTGGGTTGATCATTCTCAATATGATGAGAGTGTGGTCCACCAAAACTTCCGACCATTGGTTAATTCTGGCACCGCGTTTGGTGCTCATAGATGGCTTGCAACTCTCCAGAGGCAATGCGAACTCCTTGCAATCGTCATGTCTTCCTTACCAACCGAAGATGCCACAGGCATGAGCCCGGCTGGAAAGGGAAGCATGTTGAAGCTTGCCCAGAAGATGTCTGATTACTTCTTGTCGGGAATTTGTCCTTCGTCAGCTTGCAAATGGGACCTCCTTCATATTGGTAATATGGGAAGCGGTGACATGAAAATCATGTCTCGCAAACATATGGATGGCCCTGGTGAATGCATTGTGCTAAGTGCTTCGTCTTCTGTTTGGATGCCGGTGTCACGCCAAAGGGTGTTTGATTTCCTCATTGAGACTCGGATGAGAGGCGAGTGGGATGCTTTGTCCAATGGTGGAACCATGCTGGAGATGGTTCACATTGCTAAAGGCCAAGCACTTGGAAATTCCGTTTCTATCCTACGTGCCAATAATGCTGATGGTAATGGAAACGAGGCCATGCTATACCTACAAGATTCGTGGACTGATAGCTCCGGCTCGATGATCGTGTATTCTCCAGTCAGTGTGCAATCCTTGAAAGCGGTCATGGGCGGTGGAGATTCTTCATTTGTTGCTCTTTTGCCTTGCGGCTTTTCAATTCTACCGGATGGCCACTCCAACGGCAACAATATCATGGGAGATTCAAGTGATGGAAGCGGCAACTTCGGCGCGGACACTGACAACAGCGGATGCTTGCTGACAGTTGGAGTACAAATGTTGCTGAAGGACCTTCCAACAGGCAAGCTGACAAAGGAGACGCTTGATACTGTTGATTCGCTGGTCGGAGGCACCATTCAGAAGGTCAAAGATGCACTTGGAGTTGCATGA 2262 0.481 MDRNGQMGLIGENFESGLLGRMREDEYESRSGSENFDGGSGDELDAGDDQPRSKKKKYHRHTPQQIQELETFFKECPHPDEKQRSDLSKKLGLEIKQVKFWFQNRRTQMKTQMERHENMILKQENDKLRAENSLMKDAMANPICSSCGGPAIPGQISMEEHQIRIENARLKEELSRVCTLSNKFLGRPLSPLAPISMQTQNPGLDFGMGRNGVGCPSNFNMSLPMGFDMGDGVMGTPPPYPGSRTPMGMMVNDAQQERSMLYELAFAAMDELIKMSQPDSPLWIKASDGTTEVLNHEEYARIGSPFNDPKPTGFVTEASRETGQLFISSAALVGTMLDADRWAEMFPCMIARAQTLDVISNGMDGSRNGSIQVMQAEIQLPSPLVPVRQYTFLRYCKQHAEGVWVVVDVSIDINANSANGNPFMSCKRLPSGCILQDMNGFCNVTWVDHSQYDESVVHQNFRPLVNSGTAFGAHRWLATLQRQCELLAIVMSSLPTEDATGMSPAGKGSMLKLAQKMSDYFLSGICPSSACKWDLLHIGNMGSGDMKIMSRKHMDGPGECIVLSASSSVWMPVSRQRVFDFLIETRMRGEWDALSNGGTMLEMVHIAKGQALGNSVSILRANNADGNGNEAMLYLQDSWTDSSGSMIVYSPVSVQSLKAVMGGGDSSFVALLPCGFSILPDGHSNGNNIMGDSSDGSGNFGADTDNSGCLLTVGVQMLLKDLPTGKLTKETLDTVDSLVGGTIQKVKDALGVA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05484 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 750 IPR042160 -
Vivi2g05484 753 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vivi2g05484 753 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vivi2g05484 753 SUPERFAMILY Bet v1-like 257 485 - -
Vivi2g05484 753 SUPERFAMILY Bet v1-like 504 726 - -
Vivi2g05484 753 MobiDBLite consensus disorder prediction 18 32 - -
Vivi2g05484 753 Gene3D - 43 128 - -
Vivi2g05484 753 CDD homeodomain 55 113 IPR001356 GO:0003677
Vivi2g05484 753 SUPERFAMILY Homeodomain-like 37 112 IPR009057 -
Vivi2g05484 753 ProSiteProfiles START domain profile. 254 489 IPR002913 GO:0008289
Vivi2g05484 753 FunFam Homeobox-leucine zipper protein HDG1 40 128 - -
Vivi2g05484 753 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vivi2g05484 753 Coils Coil 106 141 - -
Vivi2g05484 753 CDD START_ArGLABRA2_like 258 485 - -
Vivi2g05484 753 SMART START_1 263 486 IPR002913 GO:0008289
Vivi2g05484 753 MobiDBLite consensus disorder prediction 1 62 - -
Vivi2g05484 753 Pfam START domain 263 485 IPR002913 GO:0008289
Vivi2g05484 753 SMART HOX_1 54 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05484 Vivi-Chr2 180474104 180478905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05484 1 750 Homeobox Transcription Factor Family AT3G61150 50.973 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g05484 START 8.5e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05484 K09338 - gmx:100794400 1008.82