Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05479 ATGGTTCCGCCTCCACCACCGGTGGACAACGGCGAATCCACCGCAGCTGTTACAATTACAACCCCCGCTATGGACTCCCAGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTATAACCTAGTCGAGGATAAATCCATCGACGACGTTATTTCATGGAACGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGTAATTTGCTTCCAAAATATTTCAAACACAATAATTTCTCAAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGCTGGGAATTCTCGAACGATTGTTTCCGAAGAGGTGAGAAGCGCCTTCTATGCGAGATTCAGCGCCGGAAAATCTGTTCTGCGGTCACGACATCTGTTTCTGCTGTTACGACGGCGGGGGAGACCCCGACGGTTCCGGTTGCAGTTGCTTCACCTATGCCGCTGACTGTAATTCCTATGGCGATGCCGATGGTTTCACCGTCGAATTCTGGTGAAGAACAGGTGATATCATCGAGTTCGTCTCCGTCGCGAGCGCCATCGGAGCTTCTTGACGAGAACGAGAGATTGAGGAAAGAAAATGTTATGCTGAACAAGGAACTTGCTGAGATGAGATTGCTTTGCAACAATATATACACTCTCATGTCAAGTTATGCAAACAACAACAATAGCAATAACAATAGCTGTAATAATAATAATAATAATCAAACGGACGGTGGCGCGCAAGGAAGCAGAGAGTCCGGTATGACGGCAGTGAGGCCGTTGGATTTGATGCCGGCGATGAAACGAAGCTCCGGCATGGAAGAGGTGAATCCGAAGCTGTTTGGCGTTGCTATTGGAACGAAGCGAATGAGAGAAAACGGTTGCGAAAGAGGAGAAAGAGGAAGAGATGATACACTGTTGCGACTACATCAACCAGGTTCTCCGGATGTGAAATCAGAGCCGTTGGATTGTCTGGATAGTGATCAAACGCCATGGGTGAACCGGTGTACAAGAGCGAACGAGAGTTTATGTAAATGA 1038 0.4711 MVPPPPPVDNGESTAAVTITTPAMDSQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSAVTTSVSAVTTAGETPTVPVAVASPMPLTVIPMAMPMVSPSNSGEEQVISSSSSPSRAPSELLDENERLRKENVMLNKELAEMRLLCNNIYTLMSSYANNNNSNNNSCNNNNNNQTDGGAQGSRESGMTAVRPLDLMPAMKRSSGMEEVNPKLFGVAIGTKRMRENGCERGERGRDDTLLRLHQPGSPDVKSEPLDCLDSDQTPWVNRCTRANESLCK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05479 345 MobiDBLite consensus disorder prediction 231 253 - -
Vivi2g05479 345 MobiDBLite consensus disorder prediction 167 187 - -
Vivi2g05479 345 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Vivi2g05479 345 MobiDBLite consensus disorder prediction 166 193 - -
Vivi2g05479 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 250 IPR027725 -
Vivi2g05479 345 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g05479 345 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g05479 345 Gene3D - 26 124 IPR036388 -
Vivi2g05479 345 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g05479 345 FunFam Heat stress transcription factor B-4 26 124 - -
Vivi2g05479 345 Coils Coil 193 213 - -
Vivi2g05479 345 MobiDBLite consensus disorder prediction 231 250 - -
Vivi2g05479 345 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g05479 345 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g05479 345 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05479 Vivi-Chr2 180399446 180401125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05479 6 344 HSF AT5G62020 45.580 1.37e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi2g05479 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05479 K09419 - gmx:100812267 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05479 2 180399446 180401125 Vivi2g05479 2 180399446 180401125 ECH
Vivi2g05479 2 180399446 180401125 Vivi4g01760 4 79524192 79528926 PCT