Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05471 ATGGTTATGTTTATGTTTCATCTCAACACATCTCTACTCCCCTTCCTCCTCCTTCTCTTCCTCAACCATGTCCAATCCCAAACCTCCATGCAACCTCTTCCCACAGACATCTCTCACCACAAATGGGAACCCTCCTTTGCAATCACAGTTGGTTCCATACTTTGCCTACTCCTTTTCCTAGGAATCATCTTTTTCTACATCAGAAACTGCGTTGAATCACACATCATCATCACAAGAACAAACCACACCACTGATTGTCCTTGCTCATGTTCTCATGGTATCAACCAAGAGCTTCTCAACACTTTCCCTATCCTCTTTTACTCAGCTATCAAGGATCTTAAAACTGATAAAGGACCATTGGAATGTGCTGTTTGTTTAACAGATTTCAAAGAAAATGATACCTTGAGATTGTTACCTAAATGCAACCATGTTTTTCACCCTCAGTGCATTGATTCATGGCTAGCTTCGCATGTCACATGTCCTGTTTGTCGGGCAAATCTTAACCAAGATTCTTGTCAGGTTTCTATCCCAATTATCACCCCACCCCATTTCAACAATGACCATGTGTGTGAAGAAAGTTCTCAAACCGAAACTGAAACTGAAACCGAACACGAAATCAGTCTCAATAATAATGCTTCCAATGAGCAAAACCCAAACCAAATCGGAGAAAGTATCAATTGTGATGATGCACATGCATCAAAACCGAAGCTTTTGAGGTCAAATTCAACTGGCCATTCTCTGGATGAACAAGTGAAGTGTGAGGAGAAGTACACACTGATGTTACCAGAGGATGTAAGGAGGTACATTTTGGTTAACCATGGGAAAAGCTGTCAGCTTTCTGTGAACGGCGAGGCGAAGGTTGAGAAGTGGGTTTGGTGTGCAAGACGTGGTTAG 894 0.4206 MVMFMFHLNTSLLPFLLLLFLNHVQSQTSMQPLPTDISHHKWEPSFAITVGSILCLLLFLGIIFFYIRNCVESHIIITRTNHTTDCPCSCSHGINQELLNTFPILFYSAIKDLKTDKGPLECAVCLTDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVSIPIITPPHFNNDHVCEESSQTETETETEHEISLNNNASNEQNPNQIGESINCDDAHASKPKLLRSNSTGHSLDEQVKCEEKYTLMLPEDVRRYILVNHGKSCQLSVNGEAKVEKWVWCARRG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05471 297 SMART ring_2 122 163 IPR001841 -
Vivi2g05471 297 MobiDBLite consensus disorder prediction 190 226 - -
Vivi2g05471 297 SUPERFAMILY RING/U-box 114 170 - -
Vivi2g05471 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 171 IPR013083 -
Vivi2g05471 297 MobiDBLite consensus disorder prediction 190 204 - -
Vivi2g05471 297 PANTHER RING FINGER DOMAIN-CONTAINING 36 167 - -
Vivi2g05471 297 CDD RING-H2_EL5-like 121 164 - -
Vivi2g05471 297 Pfam Ring finger domain 121 164 IPR001841 -
Vivi2g05471 297 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vivi2g05471 297 MobiDBLite consensus disorder prediction 205 226 - -
Vivi2g05471 297 FunFam E3 ubiquitin-protein ligase ATL6 83 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05471 Vivi-Chr2 180210397 180211950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05471 10 270 Rapid Response to Elicitors AT3G05200 33.829 1.56e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05471 K10664 - gmx:100782532 278.87