Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05468 ATGGGATTTCAAGAAAAAGTAGCAAAACCAAATTTGAGAAAGGGATTATGGTCACCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAGTATGGTCATAGCTGCTGGAGTTCTGTTCCCATTAAGGCAGGTTTACAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAATTACCTAAGACCAGGATTAAAGAAAGGTGTTCTTAGCAAAGATGAGGAAGACACAGTTATTACTCTTCACCACATGTTAGGCAACAAGTGGTCTCAGATAGCACAACAATTACCAGGAAGAACCGACAATGAAATAAAAAATTATTGGCACTCATATTTAAAAAAGAAAGTGCTCAAAACTAAGGAAATTGATCAAATTCAATATGCTAGCTCAAGTTCAAATACAATGGATTCTTTACATTCAAGACAAAGAAACACAAATCAAGATTCTAATAATTTATTATTAGAAAACACTAACAAATCACCAGCCAGTGAAATTTGTGAAAGCTCATTACCAAAACTATTATTTACTGAGTGGCTTTCATTAGATCATATAAACTCAGATGATTCTTTTATCTTGCAAAATGGCTATGATCAAAATTCAATTTTTCAAGAAAATGTTATGCAATTGCCAGAAGGAAAGGTTGGTCAAGAAGATCATTATCATGATAGTTTAATTCAAAATCTAGACAATGAGGTTTATTTTTCATCACAACTTGAAATGTCAAATCATGTTGATGAAAATGAATTGATGCATTATATGAACAATGGTGGAATGTATATATGA 783 0.318 MGFQEKVAKPNLRKGLWSPEEDNKLRNYILKYGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKKGVLSKDEEDTVITLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVLKTKEIDQIQYASSSSNTMDSLHSRQRNTNQDSNNLLLENTNKSPASEICESSLPKLLFTEWLSLDHINSDDSFILQNGYDQNSIFQENVMQLPEGKVGQEDHYHDSLIQNLDNEVYFSSQLEMSNHVDENELMHYMNNGGMYI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05468 260 SMART sant 13 63 IPR001005 -
Vivi2g05468 260 SMART sant 66 114 IPR001005 -
Vivi2g05468 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g05468 260 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g05468 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g05468 260 Gene3D - 69 152 - -
Vivi2g05468 260 PANTHER MYB DOMAIN PROTEIN 55 6 238 - -
Vivi2g05468 260 CDD SANT 17 61 IPR001005 -
Vivi2g05468 260 FunFam MYB transcription factor 11 67 - -
Vivi2g05468 260 Pfam Myb-like DNA-binding domain 71 112 IPR001005 -
Vivi2g05468 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g05468 260 FunFam MYB transcription factor 69 140 - -
Vivi2g05468 260 CDD SANT 71 112 IPR001005 -
Vivi2g05468 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g05468 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g05468 260 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05468 Vivi-Chr2 180076226 180079292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05468 4 255 MYB Transcription Factor Family AT3G48920 44.106 1.33e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g05468 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05468 K09422 - gmx:100803537 316.235