Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05462 ATGGGGGTTAGGAATCTATGGGACATTCTCGAATCTTGCAAGAAAACGGTTCCTCTTCACAGTCTCCAGAACAAAAGGGTGTGTGTTGATCTATCGTGCTGGGTGGTTCAGCTTCATAAAGTGTCGCATGCTTGTTTGAAAGAGAGGGTTTTTCTTAGAGGACTCTTTCATCGTCTTAGAGCTCTTATTTCCCTCAATTGCACCGTCGTTTTCGTTTCAGATGGGTCAATACCTGCCATCAAAATATCAACTTATAGGCGCCGCTTAAACAATGGAAAGGAGGTTGCTCAAAACGAAACTAACTCACAGAATGCGATATCTTTACGAAGAAATTTGGGGTCTGAATTTTCATGCATGGTTAAAGAGGCTAAAGCCTTGGGGATGGCTCTTGGCGTCTCTTGTTTGAATGGGATTGAAGAGGCTGAAGCTCAGTGTGCTTTGTTGAACTCTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATTTGCCTTGGAGATGGTGGGTATGTTGTATGTTATGAGATGGCAGACATTGAAAGTAAACTTGGACTTGGACGCGATTCATTGATTGCTCTCTCCTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGCCAGATAGTAAAGTCAATTGGGGACAAAGATGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGATGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCAGATTCCGATTTTGTGCTCAAGGCTCATTCTCAGTTTCCATTTCAACGTACTAAGCTCCATCATATATGTGCTGTATACTTCGAATGGCCTTCAGAGAGAACAGATGGATATATCCTTCCATGTATAGCAGAAAGAGATTTACGACGATTTGCCAATTTGCGATCAACTTCATCTGAACTTGGGTTGAACCTTCCTTTACATGAGATCCCTGTGAAATGTCCTGTGTCAGAAATCATTAAGTGTCGAAAAGTGCAAGGGAGAGAGTGCTTTGAGGTTTCTTGGAAAGACATGGATGGACTCGAGACATCAATAGTACCTGCAGATCTTATACAAAGTGCATGTCCCGAGAAGATTTTGGAATTTGAGGAGAAAAAATTGCTGCGGAAGAAACAAAACGTTCAAAAAAGAAGACCTAAGAAAAAGGAAACTGTGCCTTCTCTGGCCGAGCTTGATCTAAAACTGCAGGGCATGTTGTTAGATGATAATTTGGAGGACAATACCGACAATACCGATCACGATGCCACTGATTCTATCGAGAGGATATTAGAAGAAACAACTTCTTTGGTTGATGCTGTTCTAAACACAGAAAAATCGACGCTGTCACATGACGATTACGATGACATAGAAAACATTGGATGGACTCAGAATATCAGCAATATATCAAGCATGACAAGCAATGATTCTATCGGGAGGATATTAGAAGAAACAACTTCTATGGTTGATGCCGTTCTAAACACGGAAAAATCGATCCTGTCACACGATGACAATGACGTAGAAAACATTGGATGGACTCAAAATATCAGCAACATATCAAGCATGAAAAGCAATGAGTCTGTTTCTAGTACAGACAAAAGTGTGGTCATAGATCTTTTGAGCCCTTCTCCATTTAAGCCATCAAATACTTCAAAATTTCATCCATCAAGTGACCAAAATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGAGGTGTCACCTGAACACAAGCAGAAAGCTAAAGAGTTGAGATTGTTTTTAGCAAGTATTAGAAATGAAATCCATTGA 1887 0.398 MGVRNLWDILESCKKTVPLHSLQNKRVCVDLSCWVVQLHKVSHACLKERVFLRGLFHRLRALISLNCTVVFVSDGSIPAIKISTYRRRLNNGKEVAQNETNSQNAISLRRNLGSEFSCMVKEAKALGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREICLGDGGYVVCYEMADIESKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGDKDVLKKFASEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQFPFQRTKLHHICAVYFEWPSERTDGYILPCIAERDLRRFANLRSTSSELGLNLPLHEIPVKCPVSEIIKCRKVQGRECFEVSWKDMDGLETSIVPADLIQSACPEKILEFEEKKLLRKKQNVQKRRPKKKETVPSLAELDLKLQGMLLDDNLEDNTDNTDHDATDSIERILEETTSLVDAVLNTEKSTLSHDDYDDIENIGWTQNISNISSMTSNDSIGRILEETTSMVDAVLNTEKSILSHDDNDVENIGWTQNISNISSMKSNESVSSTDKSVVIDLLSPSPFKPSNTSKFHPSSDQNIEVINLSDSENEVSPEHKQKAKELRLFLASIRNEIH 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05462 628 Gene3D - 198 259 - -
Vivi2g05462 628 SUPERFAMILY Chromo domain-like 355 410 IPR016197 -
Vivi2g05462 628 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vivi2g05462 628 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Vivi2g05462 628 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 69 88 IPR006084 -
Vivi2g05462 628 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vivi2g05462 628 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Vivi2g05462 628 CDD CSD 356 407 - -
Vivi2g05462 628 Gene3D - 353 416 - -
Vivi2g05462 628 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 565 IPR006084 -
Vivi2g05462 628 SMART xpgineu 128 198 IPR006086 GO:0004518
Vivi2g05462 628 Gene3D - 2 197 - -
Vivi2g05462 628 ProSiteProfiles Chromo and chromo shadow domain profile. 354 414 IPR000953 -
Vivi2g05462 628 SUPERFAMILY PIN domain-like 2 213 IPR029060 -
Vivi2g05462 628 FunFam Flap endonuclease GEN-like 1 198 255 - -
Vivi2g05462 628 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Vivi2g05462 628 CDD PIN_GEN1 2 198 - -
Vivi2g05462 628 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Vivi2g05462 628 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 335 IPR036279 -
Vivi2g05462 628 SMART xpgn3 1 95 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05462 Vivi-Chr2 179958138 179963150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05462 1 234 Core DNA Replication Machinery Family AT5G26680 26.172 3.30e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05462 K15338 - gmx:100806919 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05462 2 179958138 179963150 Vivi2g05462 2 179958138 179963150 ECH