Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05442 ATGGAAACCGCAACCACCCTCACCGGTTTACTCCAATCCGTCGCCAAAACATTCCCCTCTCGCCGCGCCATCTCCCTCGCCGGCAAATTCGACCTCACTCATTCTCATCTCCATGAATTAGTCGAATCCGCCGCAGATCATCTCATCGCTTCCGGAATCAAACCAAACGACGTCGTTGCTCTCACTTTCGCCAACACCGTCGAGTATGTTATATTGTTTTTGGCTGTTATTCGAATCCGAGCCACGGCGGCGCCGTTGAATGCAGCTTATACAGCGGAAGAATTTGAATTTTATTTATCTGACTCCGAATCGAAGCTTCTGTTAACGCCGTTAGAAGGTAACAAGCCGGCGCAAGAGGCAGCTTCGAAACTCAAAATTCCTCTCGGCTCGGCTTCTCTCACAAAAACTGAAGAAGAAACCAAGCTTACAATCTCCCTGAACCATCCCGATTCAGGTGCAAAATCTGACTCAGGAAACTCGGTCGCGAAACTCGTTAACGAACCATCCGACGTGGCACTTTTTCTTCACACATCAGGTACCACGAGTCGTCCCAAGGGAGTTCCGCTGACTCAACACAATCTCGTTTCGTCTGTGAGAAACATCCAATCGGTTTACCGACTCACTGAGTCAGATTCAACCCTGATCGTGCTTCCACTTTTCCATGTTCATGGTTTAATCGCTGGGTTACTGAGTTCACTCGGTGCTGGGGCTGCGGTGGCGTTACCGGCGGCGGGGAGATTCTCAGCCACAACGTTCTGGAAAGACATGATTCAATACAATGCGACATGGTACACAGCAGTACCTACCATACACCAGATCATACTAGATCGCCACCAAAATAACCCCGAACCTGTTTACCCGAAGCTCCGGTTTATTAGAAGCTGTAGCGCTTCATTGGCACCGGTTATTCTAAGTCGTTTAGAGGAATCTTTTGGCGCACCAGTTTTGGAGGCTTATGCTATGACAGAGGCTACTCATTTGATGAGTTCGAATCCTTTGCCAGAAGATGGGCCCCACAAAGCTGGGTCGGTTGGGAAGCCCGTGGGTCAAGAAATGGCTATACTTGATGAGTCGGGTAAGGTTCTGGAGGCTGGGGTTAATGGTGAAGTTTGTATTAGAGGAGAAAATGTTACCAAAGGTTATAAGAATAATGAGGCTGCTAATACGGCAGCGTTTTTGTATGGTTGGTTTCACACTGGGGATATTGGTTTCTTTGATTCTGATGGGTATTTGTCTCTTGTGGGTCGGATTAAAGAGCTCATTAACAGAGGAGGAGAGAAAATATCACCAATTGAAGTGGATGCTGTTCTTCTAACACATCCTGACGTAGCTCAAGCCGTTGCTTTTGGAGTGCCAGATCAGAAATATGGGGAAGAGATACATTGTGCAATCATACCAAGAGAAGGGTCAACCATTGATGCTGAAGAGGTGCTAACATTTTGCAAGAAGAATCTCACAGCTTTTAAAGTCCCCAAAAAGGTTTTCATTACTGATTCTTTGCCCAAGACAGCTACTGGCAAGATTTTGCGTCGTCTTGTAGCAGAACACTTTATTTCTAAAGCTTGA 1566 0.4681 METATTLTGLLQSVAKTFPSRRAISLAGKFDLTHSHLHELVESAADHLIASGIKPNDVVALTFANTVEYVILFLAVIRIRATAAPLNAAYTAEEFEFYLSDSESKLLLTPLEGNKPAQEAASKLKIPLGSASLTKTEEETKLTISLNHPDSGAKSDSGNSVAKLVNEPSDVALFLHTSGTTSRPKGVPLTQHNLVSSVRNIQSVYRLTESDSTLIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSATTFWKDMIQYNATWYTAVPTIHQIILDRHQNNPEPVYPKLRFIRSCSASLAPVILSRLEESFGAPVLEAYAMTEATHLMSSNPLPEDGPHKAGSVGKPVGQEMAILDESGKVLEAGVNGEVCIRGENVTKGYKNNEAANTAAFLYGWFHTGDIGFFDSDGYLSLVGRIKELINRGGEKISPIEVDAVLLTHPDVAQAVAFGVPDQKYGEEIHCAIIPREGSTIDAEEVLTFCKKNLTAFKVPKKVFITDSLPKTATGKILRRLVAEHFISKA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05442 521 PANTHER ACYL-COA SYNTHETASE 5 517 - -
Vivi2g05442 521 FunFam Peroxisomal-coenzyme A synthetase 6 416 - -
Vivi2g05442 521 Gene3D - 417 519 IPR045851 -
Vivi2g05442 521 Gene3D - 5 416 IPR042099 -
Vivi2g05442 521 Pfam AMP-binding enzyme 12 423 IPR000873 -
Vivi2g05442 521 SUPERFAMILY Acetyl-CoA synthetase-like 5 518 - -
Vivi2g05442 521 CDD FACL_fum10p_like 19 515 IPR045310 GO:0016874
Vivi2g05442 521 FunFam 4-coumarate--CoA ligase 2 419 520 - -
Vivi2g05442 521 ProSitePatterns Putative AMP-binding domain signature. 174 185 IPR020845 -
Vivi2g05442 521 Pfam AMP-binding enzyme C-terminal domain 432 507 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05442 Vivi-Chr2 179613672 179616620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05442 25 511 Monolignol Biosynthesis Gene Families AT4G19010 29.200 2.26e-55 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05442 K22133 - gmx:100779306 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05442 2 179613672 179616620 Vivi2g05442 2 179613672 179616620 ECH