Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05425 ATGGGTGATAATTCAGATAGTAATAGAAACCTTGATGTGGTTTTAAATGTAAGCAACGATGCCACGAAAAAGTGTGACGAGTCAAGCATTGAAGATTATGTACCTCTTTTGCAAAAGTTGGTGGCAGAGGTAGTGGGAACATTCTTAATATTTGTTGGATGTGGCTCTGTAGTTGTTAACCTTAACAATGAAAATGTAGTGACACTCCCTGGAATTGCAATTGTTTGGGGACTTGCAGTTGTGGTATTGGTATATTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCAGTCACCATTGCTCATGCCTCCACCAAAAGATTTCCATTGATGCAGGTACCATCATATATAATTGCTCAACTCATTGGATCAATACTTGCAAGTGGAGCTCTCAAAATTATATTCAGTGACAAAGAAAATCATTTTGTGGGAACACTTCCTGCTGGTTCTAATCTCCAAGCTTTTGTGGTTGAGTTTATAATCACTTTCTACCTTATGTTCATCATTTCTGGAGTTGCCACCGATAATAGAGCGATCGGTGAATTGGCAGGACTTGCAGTTGGATCTACAATTATAATATGTGTGTTATTTGCCGGACCAATCACGGGAGCATCAATGAATCCAGCGAGAAGTTTAGGGCCAGCTATTTTACACCACGAATATAGAGGAATATGGATATATTTGGTGTCGCCTACTCTAGGAGCATTGGCTGGTACGCATGCATATGCTTTCATTAGATTCACAAGCAAACCAGTGCGTGAGCTCACCAAGAGTAGTTCATTCCTTAAAGGTTCGGGAAGCAAGTGA 810 0.4037 MGDNSDSNRNLDVVLNVSNDATKKCDESSIEDYVPLLQKLVAEVVGTFLIFVGCGSVVVNLNNENVVTLPGIAIVWGLAVVVLVYSLGHISGAHFNPAVTIAHASTKRFPLMQVPSYIIAQLIGSILASGALKIIFSDKENHFVGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTIIICVLFAGPITGASMNPARSLGPAILHHEYRGIWIYLVSPTLGALAGTHAYAFIRFTSKPVRELTKSSSFLKGSGSK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05425 269 Pfam Major intrinsic protein 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 SUPERFAMILY Aquaporin-like 34 256 IPR023271 -
Vivi2g05425 269 PANTHER AQUAPORIN NIP2-1 24 263 IPR034294 -
Vivi2g05425 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05425 269 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Vivi2g05425 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05425 Vivi-Chr2 179269397 179270696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05425 2 269 Major Intrinsic Protein MIP AT5G37820 55.762 8.60e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05425 K09874 - gmx:100812577 396.356