Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05424 ATGGGTGATAATTCAGATAGTAATAGAAACCTTGATGTGGTTTTAAATGTAAGCAACGATGCCACGAAAAGTGTGACGAGTCATATCTCTGGTGCTCATTTCAATCCTGCAGTCACCATTGCTCATGCCTCCACCAAAAGATTTCCATTGATGCAGGTACCATCATATATAATTGCTCAACTCATTGGATCAATACTTGCAAGTGGAGCTCTCAAAATTATATTCAGTGACAAAGAAAATCATTTTGTGGGAACACTTCCTGCTGGTTCTAATCTCCAAGCTTTTGTGGTTGAGTTTATAATCACTTTCTACCTTATGTTCATCATTTCTGGAGTTGCCACCGATAATAGAGCGATCGGTGAATTGGCAGGACTTGCAGTTGGATCTACAATTATTATATGTGTGTTATTTGCCGGACCAATCACGGGAGCATCAATGAATCCAGCGAGAAGTTTAGGGCCAGCTATTGTACACCACGAATATAGAGGAATATGGATATATTTGGTGTTACCTACTCTAGGAGCATTGGCTGGTACGCATGCATATGCTTTCATTAGATTCACAAGCAAACCAGTGCGTGAGCTCACCAAGAGTAGTTCATTCCTTAAAGGTTCGGGAAGCATGTGA 627 0.4067 MGDNSDSNRNLDVVLNVSNDATKSVTSHISGAHFNPAVTIAHASTKRFPLMQVPSYIIAQLIGSILASGALKIIFSDKENHFVGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTIIICVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVLPTLGALAGTHAYAFIRFTSKPVRELTKSSSFLKGSGSM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05424 208 Gene3D Glycerol uptake facilitator protein. 22 198 IPR023271 -
Vivi2g05424 208 PRINTS Major intrinsic protein family signature 128 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 PRINTS Major intrinsic protein family signature 165 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 PRINTS Major intrinsic protein family signature 15 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 PRINTS Major intrinsic protein family signature 97 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 SUPERFAMILY Aquaporin-like 25 196 IPR023271 -
Vivi2g05424 208 Pfam Major intrinsic protein 24 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05424 208 ProSitePatterns MIP family signature. 33 41 IPR022357 -
Vivi2g05424 208 PANTHER AQUAPORIN NIP2-1 26 202 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05424 Vivi-Chr2 179264337 179265339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05424 26 203 Major Intrinsic Protein MIP AT5G37820 63.483 3.53e-74 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05424 K09874 - gmx:100812577 302.367