Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05401 ATGGGTGATAATTCAGATAGTAATAGAAACCTTGATGTGGTTTTAAATGTAAGCAACGATGCCACGAAAAAGTGTGACGAGTCAAGCATTGAAGATTATGTACCTCTTTTGCAAAAGTTGGTGGCAGAGGTAGTGGGAACATTCTTCTTAATATTTGTTGGATGTGGCTCTGTAGTTGTGAACCTTAACAATGATAATATAGTGACACTCCCGGGAATTGCAATTGTTTGGGGACTTGCAGCTGTGGTATTGGTATATTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCAGTCACCATTGCTCATGCCTCCACCAAAAGATTTCCATTGATGCAGGTACCATCATATATAATTGCTCAACTCATTGGATCAATACTTGCAAGTGGAGCTCTCAAAATTATATTCAGTGACAAAGAAAATCATTTTGTGGGAACACTTCCTGCTGGTTCTAATCTCCAAGCTTTTGTGGTTGAGTTTATAATCACTTTCTACCTTATGTTCATCATTTCTGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCAGGACTTGCAGTTGGATCTACAATTATCATATGTGTGTTATTTGCCGGACCAATCACGGGAGCATCAATGAATCCAGCGAGAAGTTTAGGGCCAACTATTGTACACCACGAATATAGAGGAACATGGATATATTTGGTGTCACCTACTCTAGGAGCATTGGCTGGTACGCATGCATATGCTTTCATTAGATTCACAAGCAAACCAGTGCGTGAGCTCACCAAGAGTAGTTCATTCCTTAAAGGTTCGGGAAGCAAGTGA 813 0.4059 MGDNSDSNRNLDVVLNVSNDATKKCDESSIEDYVPLLQKLVAEVVGTFFLIFVGCGSVVVNLNNDNIVTLPGIAIVWGLAAVVLVYSLGHISGAHFNPAVTIAHASTKRFPLMQVPSYIIAQLIGSILASGALKIIFSDKENHFVGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTIIICVLFAGPITGASMNPARSLGPTIVHHEYRGTWIYLVSPTLGALAGTHAYAFIRFTSKPVRELTKSSSFLKGSGSK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 PANTHER AQUAPORIN NIP2-1 24 264 IPR034294 -
Vivi2g05401 270 SUPERFAMILY Aquaporin-like 34 257 IPR023271 -
Vivi2g05401 270 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Vivi2g05401 270 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g05401 270 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05401 Vivi-Chr2 178935153 178936455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05401 2 270 Major Intrinsic Protein MIP AT5G37820 55.019 2.03e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05401 K09874 - gmx:100812577 405.216