Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05389 ATGTCAGTTGCAAAACTCCAGGCCTCTGACACTCTGGATGTCATGAGAACGGAAGATGGAATAGAAAACATAATCAGACAAGCAATTGGCAAAGAACCTTTCTTTTATTTTCCAAGGGTCAGTGACAGCCCAGGACAGTTGATTCCATTTCTTCATGCTTTTGATCCGCAAGGTGTTAGCAATGTTTTTTCAGAATATCCAGGTTGGCCTTTGCTCTATCCTCTGAAGGTTCCGACGGAAAAATGTGAGAAGTGTTCTCAAGAATTCTGCTCAACCCTTAACTATAGAAGACATTTACCTGTGCATCACCGATTCAAAAAGCTTGATAAGGATACTTCAAAAACTAGGGAGCTTTTAGGGGCATATTGGGATAAGCTCTCGGTAGAAGAGGCGCAGGAAGTTGTATCGTTTGAAAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCGGTTTTGCATGCTTTGATAGCTCTTACTCAAAAACAAGGATTCTTTTTTCTTCTTCCGTCTTATCTGAGGGCCGGCGGTGCCCTATTGGACATTGTTCAATCTAAACCTTCCAGTTTTCCTATACCTTCCCAGGAGTTGTTCAGTATCCTTGATGATGCTAGTGAAGGAACATTTTTATTGGGGACAACAGCGTCAATGCAAAAATCTGTTTTTCCTGGAGGGGCTGGAAAAATTGGTCTTGAACCGAAAAATGTAGTGGCTTGTTCAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAATCACTGAGGTGCCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCCCAGAAAAGACAAGCTGAGATTTTGAAAAAGAAACGCCAGAAAAAGCTTAGGCAAAAAGAACAGAAGGCTAAGGAACAGAGAAACAAGCTTGAGGTAGATACTAAAGAGAATATTGACAGTACAATGAAGACAGTATCACCAGCAGAAACATCTTTGGATACATATGATTTTGAAGCTCAAAATCCAGAGGAGTCTGCAAAGAACACTCCACATGTACCTCCTCAATCCCCTGACATCAATGATGGAACAAATGGGGATACCCAGTCAGGAAATGATTTTGGTGCTGATCTGAATATTCAACAGTCACAATGTGAAGTTGATTATCAAAGCAGAGCAATTGCCATATGGCACCAGCTGCCAAAATTCTCCCAACACACTGCGAGTGATCAGCTTACAAACAAGAATCCTCCAATTTTAAATTCTGAAGTCATTCAGAAAGATGGAACCCGCCATGATCAGAGGGCAGATGGTACATTTAATGCTGGTAAAGCGTGGCACGGAAAGCCAAAACCTGAAATTGACACGATGGTTGTGAAAACCGTAACAAAGACTGAACCAGACCTTGTAAAGGATCATGAACTGTTGATAGGAACCCGCCATGATCAGAGGGCAGATGGTACATTTAATGCTGGTAAAGCATGGCCTGGAAAGCCAAAACCTGAAATTGACAGGATGGTTTTGAAAAACGTAACAAAGACTGAACCAGACCTTGTAAAGGGCCATGATCAGAGGGCAGATGGTACATTTAATGCTGGTAAAGCATGGCACGGAAAGCCAAAACCTGAAATTGACACGATGGTTTTGAAAACCGTAACAAAGACTGAACCAGACCTTGTAAAGGATCATGAACTTTTGACAGGAACCTGCCATGATCAGAGGGCAGATGGTACATTTAATGCTGGCAAAGCGTGGCACGGAAAGCCAACACCTGAAGTTGACACGATTGTTTTGAAAACCGTAACAAAGACTGAACCAGACCTTGTAAAGGATCATGAACTTTTGATAGGATCTATATCTGTCAATCTTGCCAACTGCAGCCAATCAGAGGGTAATGTGGTGGCATCCCAAGAAAAATGTTTGATTGAGAAAGAGGTGGCAGTTCAAGAAAAGTGTTTGATTGAGAATACGGTGGACAAGCAGAATAGTTCTCAGAATAAACCAAAGAAACCTGATTTACGTACTAGTGAAAATAATCAGTCAATTGTTAAGCCTTCCATAGCAGTTAGTCAGTTTGAAACTAAAGATCCACTTCCAGTTCAAAGTGGTGGCATGGAAGATGATGCAGTTAATAGAAATGAAGTTTGTCAGAACCTGCCAAGGATTTCTAGCTATGGAAGTTGTTTCGAAAACAAAGTTCCCAATACCGAGAGTAAAATAGATCCAGTAAAGCAAAAGTTTTCGATTCAAGCTGCTAGAGAATTTCTTGCAAAAAGATGGGAAGAAGCTCTCTCATCAGATCATGTGGAATTGGTTATTTCCCTTGACTCTGAACATTCTGGGAACCAGGAAGCAAAAGAAGACGACACGTGGCTTTCAACCACCAAAGCTTCTAAATCCAAATACAGAGGGAAGGCTAAAAAGGGAACCAATCACAAAGAGAAAACAAAAAAATACTAA 2433 0.4147 MSVAKLQASDTLDVMRTEDGIENIIRQAIGKEPFFYFPRVSDSPGQLIPFLHAFDPQGVSNVFSEYPGWPLLYPLKVPTEKCEKCSQEFCSTLNYRRHLPVHHRFKKLDKDTSKTRELLGAYWDKLSVEEAQEVVSFENVMLEEVPGSSVLHALIALTQKQGFFFLLPSYLRAGGALLDIVQSKPSSFPIPSQELFSILDDASEGTFLLGTTASMQKSVFPGGAGKIGLEPKNVVACSSFLLEQILVKAWLADKDAESLRCQKQLVEEEEAAQKRQAEILKKKRQKKLRQKEQKAKEQRNKLEVDTKENIDSTMKTVSPAETSLDTYDFEAQNPEESAKNTPHVPPQSPDINDGTNGDTQSGNDFGADLNIQQSQCEVDYQSRAIAIWHQLPKFSQHTASDQLTNKNPPILNSEVIQKDGTRHDQRADGTFNAGKAWHGKPKPEIDTMVVKTVTKTEPDLVKDHELLIGTRHDQRADGTFNAGKAWPGKPKPEIDRMVLKNVTKTEPDLVKGHDQRADGTFNAGKAWHGKPKPEIDTMVLKTVTKTEPDLVKDHELLTGTCHDQRADGTFNAGKAWHGKPTPEVDTIVLKTVTKTEPDLVKDHELLIGSISVNLANCSQSEGNVVASQEKCLIEKEVAVQEKCLIENTVDKQNSSQNKPKKPDLRTSENNQSIVKPSIAVSQFETKDPLPVQSGGMEDDAVNRNEVCQNLPRISSYGSCFENKVPNTESKIDPVKQKFSIQAAREFLAKRWEEALSSDHVELVISLDSEHSGNQEAKEDDTWLSTTKASKSKYRGKAKKGTNHKEKTKKY 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05389 810 Coils Coil 256 308 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 280 365 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 650 671 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 791 810 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 771 785 - -
Vivi2g05389 810 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 510 532 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 311 365 - -
Vivi2g05389 810 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 522 806 - -
Vivi2g05389 810 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 767 810 - -
Vivi2g05389 810 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05389 Vivi-Chr2 178816969 178827707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05389 559 804 C2H2 Transcription Factor Family AT4G25610 27.200 4.11e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05389 - - vvo:131653119 1572.76