Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05384 ATGGGTTTCGATCTTGAAGAGAAAGCCAAAGAGGCCTTTGTCGAAGACCACTTTGAGTTAGCCGTTGAACTTCTCACACAAGCCATTCTTCTTGATCCTACCAAACCTGAACTCTATGCTGATCGTGCTCAAGCCAACATCAAACTCAACAACTTCACCGAGGCCGTTGCTGATGCCAACAAAGCTATTGAGTTGAATCCTTCTCTGTCAAAGGCATATTTGCGCAAAGGTAATGCATGTATGAAGCTTGAGGAGTATCAGACTGCCAAGATTGCTTTAGAGACCGGTGCCTCGTTGGCTGCAGATTCATCAAGATTTCTTAATTTGATTAAAGAATGCGATAGGCTCATTGCAGAAGAGTCTTCTACTCAGGAAAAGTCCACCACCACACAGGAGGCAACTCCAAAAGTTGTTGTTCCAGAGAAAAATCTCTTGGAGGAGCCAATAGTGGCGGTAGCTAAGCCTAAATATAGGCACGGATTTTACCAGACACCTCAAGAAGTGGTTGTAACGATATTTGCCAAGGGGGTCTCCAAAGAAAGCATTACTATCGACTTTGGTGAACAAATACTAAGGGTCAAGATTGATGTCCCTGGAGAAGATGCATATGTTTTTCAAACTCGCTTATTTGGAAAGATCATACCTTCCAGATGCCGGTATGAAGTTATGGCCACCAAAATTGAAATTCGCCTTGCTAAAGCAGAATCTATTAACTGGAAGTCCCTAGAATTCACCACAGAAGCCACAGTTGCACCAAGGGCTATTGCCTCTTCAGTTACTGGAACTCAAAGACCTACTTACCCGTCCTCAAAACCAAAAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAGAAAGATGAAAACCTTGATGGTGATGCTGCACTGAACAAATTTTTCCGGGAAATATATTCCGATGCTGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCGAATGGAACAGTGCTGTCTACAAACTGGAAGGAAGTGGGAACAAAGAAGGTTGAAGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1074 0.4274 MGFDLEEKAKEAFVEDHFELAVELLTQAILLDPTKPELYADRAQANIKLNNFTEAVADANKAIELNPSLSKAYLRKGNACMKLEEYQTAKIALETGASLAADSSRFLNLIKECDRLIAEESSTQEKSTTTQEATPKVVVPEKNLLEEPIVAVAKPKYRHGFYQTPQEVVVTIFAKGVSKESITIDFGEQILRVKIDVPGEDAYVFQTRLFGKIIPSRCRYEVMATKIEIRLAKAESINWKSLEFTTEATVAPRAIASSVTGTQRPTYPSSKPKRVDWDKLEAQVKKEEKDENLDGDAALNKFFREIYSDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05384 357 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Vivi2g05384 357 SMART tpr_5 2 35 IPR019734 GO:0005515
Vivi2g05384 357 SMART tpr_5 70 103 IPR019734 GO:0005515
Vivi2g05384 357 SMART tpr_5 36 69 IPR019734 GO:0005515
Vivi2g05384 357 PANTHER PROTEIN SGT1 HOMOLOG 4 355 IPR044563 GO:0051087
Vivi2g05384 357 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Vivi2g05384 357 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Vivi2g05384 357 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vivi2g05384 357 ProSiteProfiles SGS domain profile. 266 357 IPR007699 -
Vivi2g05384 357 Pfam CS domain 158 233 IPR007052 -
Vivi2g05384 357 SUPERFAMILY TPR-like 6 113 IPR011990 GO:0005515
Vivi2g05384 357 Pfam SGS domain 276 355 IPR007699 -
Vivi2g05384 357 Gene3D - 155 245 IPR008978 -
Vivi2g05384 357 ProSiteProfiles CS domain profile. 154 243 IPR007052 -
Vivi2g05384 357 CDD p23_CS_SGT1_like 161 243 - -
Vivi2g05384 357 FunFam Protein SGT1 homolog A 152 257 - -
Vivi2g05384 357 SUPERFAMILY HSP20-like chaperones 150 249 IPR008978 -
Vivi2g05384 357 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05384 Vivi-Chr2 178741756 178744209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05384 1 104 U-box Gene Family AT3G07370 27.885 4.43e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05384 K12795 - gmx:100780174 545.043