Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05341 ATGGATCCTAAAGCTTCAATTGATGATAACGGTGACAATAGACTCTACATTGGCAATCTTGATCTCAGAATTACAGAAGCTGCTCTACTCAAAATGTTTTCTCCTTACGGAAAGATTGTGTCGGAGGACTTCTTGTGGCACACTCGAGGTCCAAAACGTGGGGAACCACGCGGTTTCGCTTTTCTACAATATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGACGGTTAGCTTGTGGCCGGCCATTAGTGGTCCGCCTAGCAAGTGAGAGGTATGCTATGGAAGTAGCAGATAGCTCTACAAAACCAGTAGGCGAAGGGCACAAGTTGCATCTCACTGGTGGCGGCATGGGACAATCAAGCCGTGGTGCGAAAATTGCTGCAATAAAGAACAAGTTGAAGTCTTTAGAGGAAGATAATTCTAGGAACAAGAAACAAAAGCAGAGTGATAATATATCTTGA 474 0.443 MDPKASIDDNGDNRLYIGNLDLRITEAALLKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFLQYSTKEEAILAKEKMHGRLACGRPLVVRLASERYAMEVADSSTKPVGEGHKLHLTGGGMGQSSRGAKIAAIKNKLKSLEEDNSRNKKQKQSDNIS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05341 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Vivi2g05341 157 CDD RRM_RBM18 14 93 IPR039157 -
Vivi2g05341 157 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Vivi2g05341 157 Coils Coil 130 150 - -
Vivi2g05341 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Vivi2g05341 157 Gene3D - 10 102 IPR012677 -
Vivi2g05341 157 MobiDBLite consensus disorder prediction 135 150 - -
Vivi2g05341 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 145 - -
Vivi2g05341 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Vivi2g05341 157 MobiDBLite consensus disorder prediction 103 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05341 Vivi-Chr2 178033061 178035389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05341 15 95 Eukaryotic Initiation Factors Gene Family AT1G71770 38.272 7.79e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05341 K24527 - gmx:100804800 260.766