Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05335 ATGTCATCATCAGGTTTCAATCCCGGTGGTGGTGGATCGTCGGAGTATTACCCCGGCCGACCAATAAACACCATCCACAACCTTATCACAACAACCCCTTCTCTCTCCATCAACAACCTCAATCATCCCTCTCTTTACCGAACCCAACACCATCTCCAACAACAACACCATCAACAACAACAACCACTTCCTCCAATTTTTCTAGATCCTTCCACACAGATCCCTCAACATCGCATCGTCGGAAAACGCACCTTAGCTGAATTCCAAACCCAACAAAACCAAACCTACAATCACAACCTTAACCTCAACAACAACAACAACCTTAACATGAACAACAATAATCACAACCATGTTCTTTCAAATCTTTTACTTCGCTCTGTGAAACCAAGAACCGGTTTCCAGTTTCATAACAATAACCCTTTGTCTTTCTCTGTCCCTGAATTACAAAGCCCTTCATCTTTCAATAATAACTTCCAAACGCCGCGTTTAGGCGTTCCGTTACTTCACCAACTTCGCCCTCAACCACAACCACAACCACAGCATCAACCACAACATCAACCACAACCAATTAACCCGAATTTCCACTACCGAAACTCCAATTTAAGCCAAGTGGTAAACCGGGTTCAAACCACCCCCGAACCGGAGAAAAAGCTCAACGAGGATCAAAAGATTCTTCAAGAATTAGAAAAACAGCTTCTTGAAGATGATGATGAATGTGAAGAAGGCGATGCTTCGGTTATTACAACAAGTGAATGGACAGAGACTTACCAGAACCTACTAAGTGGGCCCGGTGGCCCCGATGGGCTCCTGTGTGGGCCTATTCCAGCCCAGAAACCTTCTTCATCCTCTCCAACCACATCCACCACGTCATCAACTTCCACAGCAGCTTCTTCGCATGCATCTGTTTGTTCCAAACAAACCCTAATCGAAGCCGCATCTGCAATTTCGGAAGGTAAAAACGAAATCGCTTTAGAGATCTTAACACTGCGCTTAGGTTTCAATTCGAATCCCAATGGAAATTCGGATCAACGGCTAACCAATTGCATGGCTTCCGCTCTGAAATCGAGGATCAATCCGGTTGAAAATCATTCCCATGTGGTTGAGCTTTTCGGGAGAGAACATGCAGAGTCGATTCAGTTGTTTCTGGAAAATTCGGTTTGTTTCAAGGTGAGTTACATGGCTGCGAATCTAGCGATTTTGGAATCTGCATTTGAAGAAAACGGAAGAGGCTTCTGTGTGGTGGATTTCGAAATTGGACAGGGAAAACAGTATGTGAACCTCCTGCACGCGCTCAAGGCGCGTGACATCACTCTGGCGCCAGGTTTTATGGTTAAGTTAATCGCGGTGGTGGACAACGGCGGTGATGAGATGGTTAAGGCCGTCGGAGAGATGCTGACTCGTCAAGCGGAGATGTTTAGAATCGGTTTCGAGTTTCGTCTTGTTTCGGTTTCTCAGAGGCAGGTAACTGAGCTGAGTCGCGAGTTGTTAGGTTGTGACCCGGAGGAAATTCTCGTTGTGAATTTCGCGTTTAAGCTGAATCGGATTCCAGACGAAAGCGTTTCAACTGAGAATCCCCGCGACGAGCTTCTGCGGCGCGTGAAGAAACTCTCCCCGCGCGTGGTAACTGTTGTGGAGCAAGAAATGAACTGTAATACGGCGCCGTTTTTGGCTCGAGTTGCTGAGTCGTGGTCTTACTATTCTGCTTTGTATGACTCGGTTGAAACTGTTATAGGGAAGGATAACCCGGATCGTGTGAGGATCGAAGAAGGACTGAGTCGGAAGATAAGCAACTCGGTGGCTTGTGAAGGAAGAGACCGTGTTGAACGGTTCGAGGTATTCGGAAAATGGCGGGCGCGTATGAGTATGGCGGGGTTTATGTTGATACCAATGAGTCAAAACGTTGCTGAGTCAATAAAATCGCGTCTCGCTGGAGGTAGTAACCACCGAGTTAACACGGCACTCACTGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAA 2040 0.4676 MSSSGFNPGGGGSSEYYPGRPINTIHNLITTTPSLSINNLNHPSLYRTQHHLQQQHHQQQQPLPPIFLDPSTQIPQHRIVGKRTLAEFQTQQNQTYNHNLNLNNNNNLNMNNNNHNHVLSNLLLRSVKPRTGFQFHNNNPLSFSVPELQSPSSFNNNFQTPRLGVPLLHQLRPQPQPQPQHQPQHQPQPINPNFHYRNSNLSQVVNRVQTTPEPEKKLNEDQKILQELEKQLLEDDDECEEGDASVITTSEWTETYQNLLSGPGGPDGLLCGPIPAQKPSSSSPTTSTTSSTSTAASSHASVCSKQTLIEAASAISEGKNEIALEILTLRLGFNSNPNGNSDQRLTNCMASALKSRINPVENHSHVVELFGREHAESIQLFLENSVCFKVSYMAANLAILESAFEENGRGFCVVDFEIGQGKQYVNLLHALKARDITLAPGFMVKLIAVVDNGGDEMVKAVGEMLTRQAEMFRIGFEFRLVSVSQRQVTELSRELLGCDPEEILVVNFAFKLNRIPDESVSTENPRDELLRRVKKLSPRVVTVVEQEMNCNTAPFLARVAESWSYYSALYDSVETVIGKDNPDRVRIEEGLSRKISNSVACEGRDRVERFEVFGKWRARMSMAGFMLIPMSQNVAESIKSRLAGGSNHRVNTALTVKEENGGICFGWMGRTLTVASAWR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05335 679 MobiDBLite consensus disorder prediction 260 297 - -
Vivi2g05335 679 MobiDBLite consensus disorder prediction 276 297 - -
Vivi2g05335 679 Pfam GRAS domain family 305 679 IPR005202 -
Vivi2g05335 679 MobiDBLite consensus disorder prediction 172 186 - -
Vivi2g05335 679 Coils Coil 218 238 - -
Vivi2g05335 679 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 271 667 IPR005202 -
Vivi2g05335 679 MobiDBLite consensus disorder prediction 170 196 - -
Vivi2g05335 679 ProSiteProfiles GRAS family profile. 295 679 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05335 Vivi-Chr2 177976869 177979195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05335 119 679 GRAS Transcription Factor Family AT5G52510 46.141 4.06e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g05335 GRAS 4e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05335 - - gmx:100788551 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05335 2 177976869 177979195 Vivi2g05335 2 177976869 177979195 ECH
Vivi2g05335 2 177976869 177979195 Vivi1g04421 1 94262182 94264793 PCT