Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05328 ATGGTACTGGATGAATGGAAAAGACTTTACTCAAACACTAAATCCAACTTCAGGGAGGTTGCAATCAAAGGATTTTGGGATATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGACTACAAATACCAAGATGAGAACACTGTTTCCTTCGTGACTTTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCCCGCAAGTATGCATTTGGAAAGATGCTTATCATTGGATCTGAGCCACCTTTTAAGATGCCAGTCAGTCCCGGATTTGAAAAAGAGAAAGTATATACATATGACTAG 306 0.4052 MVLDEWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKMPVSPGFEKEKVYTYD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05328 101 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 88 IPR036433 GO:0003746|GO:0006414
Vivi2g05328 101 SUPERFAMILY eEF1-gamma domain 1 85 IPR036433 GO:0003746|GO:0006414
Vivi2g05328 101 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 101 IPR001662 GO:0003746|GO:0006414
Vivi2g05328 101 Pfam Elongation factor 1 gamma, conserved domain 1 84 IPR001662 GO:0003746|GO:0006414
Vivi2g05328 101 SMART EF1G_2 1 93 IPR001662 GO:0003746|GO:0006414
Vivi2g05328 101 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 86 IPR044628 GO:0004364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05328 Vivi-Chr2 177599091 177600238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05328 1 98 Eukaryotic Initiation Factors Gene Family AT1G57720 79.245 7.08e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05328 K03233 - vvo:131611445 214.542