LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05310	ATGTGTTCGCATTCTCCCATTTGTTTTCCGACCTTGATTCGCCAAAATATCAATGACACCTATCTAACCCCAAAACCCCAAAACAAACTTAACTCAATGGCGGGTGCTAGCGGAAGAATCCTCTTCTCCCTCTCTTCTTCCATAACCAGACGCCTTCACGGTAACCGTTTCTCATTCTTCACACTCTCAAACCCTACCACCATTCCCCCACGATTCAGACCTCTCTGTTCCATAACCGCTTCACCCGAAGCTCTATCAGACACTGATACTGAAAAACACTCGATTCTCCTCGAGAAGCTGAGAGTTAGACACCTAAAAGGAAGTGTTACAAAAACAGCTTCTGAAAATGTGAAGAAATCTGAGGGAAAGAAGAAGGTTGTTGTTGTTGATGATGATGTTGATGATGTTGTTGGAAGTTTTGAGGAATTGGGAATTAGTGATGAGGTTATGGGTGCTGTTAAAGAAATTGGGATTGAAGTTCCTACTGAGATACAGTGTATTGGTATTCCCGCTGTTCTGGAGGGGAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTATTTGCTTCCACTTGTTCAGTTGCTAAGACGAGATGAGCAACTGAATGGACTAGTTTTGAAGCCCAAGCGTCCCCGAGCCGTTGTGCTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGTCATCATGCACGATTCAGGTGCACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTCAGTAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATCGAAGAGGGAAATATGGTATATGGTGACATCCAATACGTGGTATTAGACGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATTCGCAAGTTCATAGCCCCATTAAAACAGCGTGCTTCTAAACCTGATAGCCTAGGTTTCCAGACTGTTTTGGTTACTGCAACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTCCATCTGCGCACTTCCTCATTGCATAAAAGGATTTCTTCCGCTCGTCATGATTTTCTTAAACTTTCGGGTTCTGAGAACAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCCAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTGAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCTGATTTTTACAGTGAACTACCATGGGGAGGTACCAGCGGAGCAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACACTGGAGATTGCCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTCTGGACTTGGATGTCGATCACGTTATCATGTTTGATTTCCCTCTGAATTCTATCGATTACCTCCATCGCACGGGTAGAACTGCTCGTATGGGTGCTAAAGGGAAAGTAACAAGTTTGGTTACTAAAAAGGACTTTGGCTTGGCAACCAAAATAGAGGAGGCGATAAGAAAGAATGAAAGTTTGGAGGCTATCACTAAAGAAAGTCTTCGGATGGACGTAACCAGGAACCAAATCACCGAGCAAAGAAGAAAGAACAAAAATGTGGTCAAAACTTCAAAAGCTAGGGACAAATCTGATTCTCGTCCAACTTCTTCCGCTAGCAGGTCCGGTATTAGGGACAAATCTGGTTCTCGTCCAACTTCTACCGCTAACAGGTCAGGTAGGGACAAATCCAATTCTCGCACCAGTTCTGCAAATACTAGGTCAGGTAGTAGGGACAAATCCGATTCGCGCACCAGTTCTACAAATACTAGGTCTGGTATTAGGGGCAAATCTGATTCTCGCACCAGTTCTGAGGATACCAGGTCAGGTATTAGGGGCAAATCTGATTCTCGCACCGGTTCTGGGAATACCAGATCAGGCATGAAATTTGGTAAACAATCATCACCATCAAAGTCTTCAAAGAAAGGATTTCCCGTTTCAAAATCTGTAAAATCTTCCAGTCCAAGTAGCTTCATAAAAGCTTCTTCGGAGAGTAAGCGAACCGGTAAAAGGGCCACTGCCACCAAATCTACAAATCCTAAACTCAGTGTTGTCGGGTTTAGGGGGCGGAATGCATCAGCATCAGATAAGAGACAAACATTTTAA	2190	0.4416	MCSHSPICFPTLIRQNINDTYLTPKPQNKLNSMAGASGRILFSLSSSITRRLHGNRFSFFTLSNPTTIPPRFRPLCSITASPEALSDTDTEKHSILLEKLRVRHLKGSVTKTASENVKKSEGKKKVVVVDDDVDDVVGSFEELGISDEVMGAVKEIGIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGLVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIRKFIAPLKQRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKRISSARHDFLKLSGSENKLDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENLIFTVNYHGEVPAEQRVENLNKFKSNTGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDFGLATKIEEAIRKNESLEAITKESLRMDVTRNQITEQRRKNKNVVKTSKARDKSDSRPTSSASRSGIRDKSGSRPTSTANRSGRDKSNSRTSSANTRSGSRDKSDSRTSSTNTRSGIRGKSDSRTSSEDTRSGIRGKSDSRTGSGNTRSGMKFGKQSSPSKSSKKGFPVSKSVKSSSPSSFIKASSESKRTGKRATATKSTNPKLSVVGFRGRNASASDKRQTF	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05310	729	MobiDBLite	consensus disorder prediction	626	641	-	-
	Vivi2g05310	729	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	91	527	-	-
	Vivi2g05310	729	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	169	356	IPR014001	-
	Vivi2g05310	729	SMART	helicmild6	410	492	IPR001650	-
	Vivi2g05310	729	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	381	533	IPR001650	-
	Vivi2g05310	729	Pfam	DEAD/DEAH box helicase	162	345	IPR011545	GO:0003676\|GO:0005524
	Vivi2g05310	729	CDD	SF2_C_DEAD	369	501	-	-
	Vivi2g05310	729	SMART	ultradead3	157	366	IPR014001	-
	Vivi2g05310	729	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	138	166	IPR014014	GO:0003724
	Vivi2g05310	729	CDD	DEADc	149	348	-	-
	Vivi2g05310	729	MobiDBLite	consensus disorder prediction	536	729	-	-
	Vivi2g05310	729	Pfam	Helicase conserved C-terminal domain	381	492	IPR001650	-
	Vivi2g05310	729	Gene3D	-	102	357	IPR027417	-
	Vivi2g05310	729	MobiDBLite	consensus disorder prediction	564	604	-	-
	Vivi2g05310	729	MobiDBLite	consensus disorder prediction	642	691	-	-
	Vivi2g05310	729	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	169	504	IPR027417	-
	Vivi2g05310	729	Gene3D	-	368	577	IPR027417	-
	Vivi2g05310	729	MobiDBLite	consensus disorder prediction	537	563	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05310	Vivi-Chr2	177354815	177361721	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05310	137	514	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.504	7.73e-42	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05310	-		-	vvo:131623053	1266.52