Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05307 ATGAAAAGAAGAATCAAAGAACTTCTACGCCTCTCATTTTCATCTCCACACTCTAAAATTCACCACCAACCACTCTCAAGATCATTACAACCCACTTCTTCTTCTCAATGTTCAACATCTTTCTCAACCTTTTCAAAATCCCAAAGGGATTCACTGATTTTCCAACAGTTCAAAGAAAGGAAACTCAAAGGGTCATCAAAAGACTCAATTTTTAATCCAAGAGTTTCAAATTCCGTTCCAGAAAGTTTTGATACTAACGTCGAGAAAACAGTCCAAAAGGGTTTGAAAAATGAGAGTGAAAATGAAGATTCTATGGTGGTTGCTAACTTTAAGGAGTTAGGTTTGAGTGAAGTTCTTGTTGAGGTTATGGAAGAGATTGGTGATTTTTTACCAACTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGAGGGGAAGAGTTTGTTGTTGAGTTCACCTTCTCAGCCTGATAGGACATTGGCCTACTTGTTGCCCCTTATTCAGCTGCTAAGACGAGATAGTGAGTTGCATGGTTCGAATTCAAAGCATCCTCGAGCTGTTGTGCTTTGTGCTTCTGAAGAGAAAGTTGAACAGTGCTTTAATGCAGCAAGATATATCATCCATAATGCAGAATTGAAGTCTGCGAAGAATCGTGCTTCATCGGATAACAAAAAGTCAAATTCCTCAATTGGCTTAATGATTGGAACTCCTTGTGAGATTCTGCAATACATTGATGAAGGGATTGTTGTTCTTGCAGAATTAAAATACTTGGTATTGGATGAAGCCGATTCTATGCTTGGTAACCACCTTGGTCCTGAAATCCATAAAATTATCCGACCATTACAAAATCATGACTCAAAATCCGATGTCAAAAGATTGCAGACAATTTTGGCAATTTCAACTATAGCTGAGGTTTTGGGCGAAAAGTCGCCCATTGTAGAACGTCTTGAGCGCGATCATGCTGGAAATGTTTCTGCATTGTCGATAGAAATGGAGGAAGCAGAAGTTTTTCATTTGACAAAGTCTCTGGACGCTCTTAGGAAAAAATTGGAGGAGGCCATGAATTCCCTTTAG 1074 0.3873 MKRRIKELLRLSFSSPHSKIHHQPLSRSLQPTSSSQCSTSFSTFSKSQRDSLIFQQFKERKLKGSSKDSIFNPRVSNSVPESFDTNVEKTVQKGLKNESENEDSMVVANFKELGLSEVLVEVMEEIGDFLPTEIQCVVIPTILEGKSLLLSSPSQPDRTLAYLLPLIQLLRRDSELHGSNSKHPRAVVLCASEEKVEQCFNAARYIIHNAELKSAKNRASSDNKKSNSSIGLMIGTPCEILQYIDEGIVVLAELKYLVLDEADSMLGNHLGPEIHKIIRPLQNHDSKSDVKRLQTILAISTIAEVLGEKSPIVERLERDHAGNVSALSIEMEEAEVFHLTKSLDALRKKLEEAMNSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05307 357 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 246 357 IPR002004 GO:0003723
Vivi2g05307 357 Coils Coil 343 357 - -
Vivi2g05307 357 SMART ultradead3 127 330 IPR014001 -
Vivi2g05307 357 Gene3D - 75 307 IPR027417 -
Vivi2g05307 357 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 320 IPR014001 -
Vivi2g05307 357 Pfam DEAD/DEAH box helicase 132 297 IPR011545 GO:0003676|GO:0005524
Vivi2g05307 357 SUPERFAMILY PABC (PABP) domain 304 355 IPR036053 GO:0003723
Vivi2g05307 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 297 IPR027417 -
Vivi2g05307 357 Gene3D - 308 357 - -
Vivi2g05307 357 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Vivi2g05307 357 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05307 Vivi-Chr2 177281882 177284478 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05307 107 281 Eukaryotic Initiation Factors Gene Family AT3G19760 22.346 1.77e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05307 - - gmx:100800575 451.825