Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05305 ATGGCTGCGATTTCATCATCACCTAAGAATGTGGTTCCGGTGGCGTTTAACGGTGGTCTCGGGGTTGGGAGATTCGAGAATGCGTCTCTGTATGTGGGAGATCTTGATGGGAATGTGAATGAGGGTCAGCTTTATGAACTGTTCAGTCAGATTGCTCAGGTGGTTTCCATTAGGGTTTGTAGGGATCAGACCAAGAGATCGTCGCTGGGATATGCTTATGTCAACTTCTCCAATGCTCATGATGCTGTTAATGCAATGGAACATCTAAACTTCACTCCTCTGAATGAGAAGCCAATTCGTATTATGTTTTCACATCGGGATCCAAGCATTCGGAAAAGTGGATTTGCAAACGTGTTCATTAAGAATTTAGACACATCAATAGATAACAAGGCATTGCATGATACCTTTGCTGCCTTTGGACCTGTACTCTCTTGTAAGGTGGCTATTGACGATATTGGCCAATCAAGAGGATATGGTTTTGTTCAATTTGACAATGACGAGTCTGCAAAGAATGCCATTGAAAAATTGGATGGTATGTTGATAAACGACAAAAAGGTTTACGTAGGATATTTCATTCGGCGTCAGGAAAGGTCAGGAAATGGATCACCTAAGTTCACTAATGTTTATGTGAAAAACCTTTCTGAAACATACACGGATGAGGACCTTAAACAGCTCTTCAACCCTTATGGTGTAATAACAAGTGTTGTGGTCATGAAAGATGAGAATGGGAAATCGAGAGGTTTTGGTTTTGTGAATTTCCAAAACCCAGAATCAGCCGCATCTGCAGTTGAAAGTCTGAATGGGACCGCAACAAATGATGGAAAGTTTTTATTTGTGGGGAGGGCTCAGAGAAAATCAGAAAGAGAGGCAGAGTTAAAAGCCAAATTTGAGCAAGAAAAGATAAAAAGGTATGAGAAATTACAGGGTGCTAATTTGTACCTGAAAAACCTTGATGACAATCTTAATGAAGAAAAGTTGAAGGAGCTATTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTATGATGTTCATGGTCATAGCAAGGGCTCTGGTTTTATTGCCTTTTCGACACCTGAGGAAGCTAGTAAAGCTATAAATGAAATGAATGGAAAGATAATAGGACATAAGCCCCTATATGTTGCTGTGGCCCAGCGCAAAGAAGAAAGGAAAGCTCGTTTGCAGGCTCAATTTTCTCAAATTCAAGCACCGGGTGGAATCACAACTTTGCCTGGAAGAATTGCTGGATATCATCCAAGTGCACAAAGAATTGCTCCACAACAAATGTATTTTGGTCAAGGTGCACCTGGTCTCATTCCGCCTCAGCCAAATGGATACGGTTTCCAGCAACAGCTCATGCCAACTATGCGATCTGGCGTTGCTCCTAATTTCATCATGCCATACCACCTTCAGAGGCAAGGTCATCCTGGACCTAGAATGGTGCGTCGAGTTGGTAATTTCCAACCAGTGCAACAAAACCAGTTGCCCAACCGTAATTCCAACCAAGGGTTTAGATATAATGTTCGGAATGGCGTGGATCCAGTAGATCCTGAAGGTCTCACAGGTCAAATGATGGATACATCTGCAGTTGCTGTTGCATCTCCGGTTAACAATCAACGTCATAGTGGATTATCTAATAATTCACTCACATCGGCTTTGGCTTCTGCCACCCCTGAAAATCAACGCTTGATGTTGGGTGAGCATTTATATCCACTGGTGGGTCGTCTTACCTCAAACCATCAGACAGCGAAGGTTACTGGAATGTTATTAGAAATGGATCAGTCAGAGGTTATACATTTGATTGACTCTCCTGAAGAACTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTCCGGGAAGCTTCATCTGGTTCTGAAGTTGATGGTTCGTTGAAGGAATGA 1905 0.4226 MAAISSSPKNVVPVAFNGGLGVGRFENASLYVGDLDGNVNEGQLYELFSQIAQVVSIRVCRDQTKRSSLGYAYVNFSNAHDAVNAMEHLNFTPLNEKPIRIMFSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAIDDIGQSRGYGFVQFDNDESAKNAIEKLDGMLINDKKVYVGYFIRRQERSGNGSPKFTNVYVKNLSETYTDEDLKQLFNPYGVITSVVVMKDENGKSRGFGFVNFQNPESAASAVESLNGTATNDGKFLFVGRAQRKSEREAELKAKFEQEKIKRYEKLQGANLYLKNLDDNLNEEKLKELFSEFGTITSCKVMYDVHGHSKGSGFIAFSTPEEASKAINEMNGKIIGHKPLYVAVAQRKEERKARLQAQFSQIQAPGGITTLPGRIAGYHPSAQRIAPQQMYFGQGAPGLIPPQPNGYGFQQQLMPTMRSGVAPNFIMPYHLQRQGHPGPRMVRRVGNFQPVQQNQLPNRNSNQGFRYNVRNGVDPVDPEGLTGQMMDTSAVAVASPVNNQRHSGLSNNSLTSALASATPENQRLMLGEHLYPLVGRLTSNHQTAKVTGMLLEMDQSEVIHLIDSPEELKIKVSEAMQVLREASSGSEVDGSLKE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05305 634 FunFam Polyadenylate-binding protein 114 197 - -
Vivi2g05305 634 SUPERFAMILY RNA-binding domain, RBD 307 400 IPR035979 GO:0003676
Vivi2g05305 634 PANTHER RNA BINDING PROTEIN 27 90 - -
Vivi2g05305 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 624 IPR002004 GO:0003723
Vivi2g05305 634 Gene3D - 203 307 IPR012677 -
Vivi2g05305 634 Coils Coil 287 307 - -
Vivi2g05305 634 CDD RRM3_I_PABPs 205 285 - -
Vivi2g05305 634 CDD RRM4_I_PABPs 309 387 - -
Vivi2g05305 634 Gene3D - 109 202 IPR012677 -
Vivi2g05305 634 Gene3D - 308 410 IPR012677 -
Vivi2g05305 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Vivi2g05305 634 FunFam Polyadenylate-binding protein 198 292 - -
Vivi2g05305 634 SMART rrm2_1 117 189 IPR003954 GO:0003676
Vivi2g05305 634 SMART rrm2_1 29 102 IPR003954 GO:0003676
Vivi2g05305 634 SMART rrm2_1 311 383 IPR003954 GO:0003676
Vivi2g05305 634 SMART rrm2_1 207 279 IPR003954 GO:0003676
Vivi2g05305 634 CDD RRM2_I_PABPs 114 189 IPR045305 -
Vivi2g05305 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Vivi2g05305 634 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676
Vivi2g05305 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Vivi2g05305 634 Pfam Poly-adenylate binding protein, unique domain 554 619 IPR002004 GO:0003723
Vivi2g05305 634 SMART rrm1_1 29 102 IPR000504 GO:0003723
Vivi2g05305 634 SMART rrm1_1 311 383 IPR000504 GO:0003723
Vivi2g05305 634 SMART rrm1_1 207 280 IPR000504 GO:0003723
Vivi2g05305 634 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vivi2g05305 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Vivi2g05305 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Vivi2g05305 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Vivi2g05305 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Vivi2g05305 634 SUPERFAMILY PABC (PABP) domain 489 623 IPR036053 GO:0003723
Vivi2g05305 634 SUPERFAMILY RNA-binding domain, RBD 203 289 IPR035979 GO:0003676
Vivi2g05305 634 Gene3D - 20 108 IPR012677 -
Vivi2g05305 634 FunFam Polyadenylate-binding protein 293 398 - -
Vivi2g05305 634 FunFam Polyadenylate-binding protein 542 625 - -
Vivi2g05305 634 Gene3D - 543 624 - -
Vivi2g05305 634 FunFam Polyadenylate-binding protein 22 113 - -
Vivi2g05305 634 SMART poly_2 558 622 IPR002004 GO:0003723
Vivi2g05305 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Vivi2g05305 634 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 620 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05305 Vivi-Chr2 177251999 177257621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05305 27 628 Eukaryotic Initiation Factors Gene Family AT1G71770 54.959 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05305 K13126 - gmx:100783163 894.034