Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05292 ATGTCTGAAAGAATTTCTTCCGGAAATCTTGAAGATAAAAAATTGAAATGCAAAATGATTGAAGAACCTGAGCTAGAATTAAGAAAGGAATTGGAAAATATAACACCAACCTTTCAAGTTAATTCTGAGAAGGGAAAAATGGTTGAAGAACCTAAGATGATAACATCATCTGTTCAATTTGAAGGTTTATCGGCTCTAAGGGCTGGCAATATCACCATGCCAACTTCTGGTCTGTTCGAGAACGGTGAACGTTCGAGTTCATCGAAAAATGTTATTGCTGAAGTTCTCAATGAGGAAGTGAAGGAATTTCCTTGTCAATTTTGTGACAAGAAGTTCTCGAGTCCTCAGGCTCTCGGAGGACATCAAAACGCTCATAAGAAAGAGCGTGACGCCAAAAGAATTGAACAAAAAAAGAGGGAGGAGGAAATGGAATCCACCCTAAGGTTTGGATCTAATTTTTCATACCTTTATCCTTCTGCAAGTTCTGTTAACTATCAAGTGCATCCTTATTTTCATGGCAACTTTCAACCATCAATTGGGACTCGTATGAACAATAACATGCCTTCTTTGCTTGGTTCTTCATCTGTTGGCGTTGGCTATGGAGGGATGCATATGCCAAATACACCCTCCCCACCACATCCATTTATGAGGTCAGTACCAAAACCACTCATCACAACACCACAATTTGGGATGACTAATTTTATGGGTGGAAATCAAACTTCTGGGAGGTCAATTCCTCAATGGCCAAACAACGTGGAGTCGGGACTTTTTGGCCAAACTAATCAGACCCATTCATCTCATGAAGGTGGAGAAGGAAGTTCTAATGCTCAATTTTCTTATCAAGGCCTTCCAATAGAAACTCGTGATTTTATTGGAGAAGGCCAACTTCTTGCTGATGCTAATGTGTCTTCTCCATCAACTGAATCAACAGTGGAAGACCTCGACTTGAATCTCAAGCTTTAA 963 0.3998 MSERISSGNLEDKKLKCKMIEEPELELRKELENITPTFQVNSEKGKMVEEPKMITSSVQFEGLSALRAGNITMPTSGLFENGERSSSSKNVIAEVLNEEVKEFPCQFCDKKFSSPQALGGHQNAHKKERDAKRIEQKKREEEMESTLRFGSNFSYLYPSASSVNYQVHPYFHGNFQPSIGTRMNNNMPSLLGSSSVGVGYGGMHMPNTPSPPHPFMRSVPKPLITTPQFGMTNFMGGNQTSGRSIPQWPNNVESGLFGQTNQTHSSHEGGEGSSNAQFSYQGLPIETRDFIGEGQLLADANVSSPSTESTVEDLDLNLKL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05292 320 MobiDBLite consensus disorder prediction 301 320 - -
Vivi2g05292 320 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
Vivi2g05292 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vivi2g05292 320 Pfam C2H2-type zinc finger 103 128 - -
Vivi2g05292 320 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 84 320 IPR044246 GO:0009788
Vivi2g05292 320 MobiDBLite consensus disorder prediction 257 278 - -
Vivi2g05292 320 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vivi2g05292 320 Coils Coil 124 144 - -
Vivi2g05292 320 Gene3D Classic Zinc Finger 83 153 - -
Vivi2g05292 320 MobiDBLite consensus disorder prediction 122 145 - -
Vivi2g05292 320 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05292 Vivi-Chr2 177101753 177102715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05292 103 133 C2H2 Transcription Factor Family AT5G14010 70.968 4.93e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g05292 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05292 - - psat:127115617 285.804