Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05274 ATGCACCGCATTATGCTCGAAGACGATAGTAAAACCTCTAGGGAACATCAAAGGCGAATAAATCCTATTATGAGCGATGTGGTTAAAAAGGAAATCCAAAAACTGCTAGAAGCTGGAATAATATATCCTATATCTGATAGTAAATGGGTTAGCCCTGTTCACGTCGTACCAAAGAAAGGAGGAGTCACTGTAATCACTAACGCAAAAGGAGAATCTGTAGCACAACGTACCCAAACTGGATGGAGGATGTGCATTGACTATAGGAAGCTAAATAAAGCTACCCGAAAAGACCATTTCCCTTTACCTTTCATAGATCAAATGCTCGAACGCCTAGCTAAACACTCACATTTTTGTTATCTGGATGGATACTCCGGATTTTTCCAAATTCCTATCCACCCTGACGACCAAGAGAAGACCACATTCACCTGTCCTTATGGTACATTCGCCTATAGACGAATGCCTTTTGGACTCTGCAATGCACCCGCGACCTTCCAAAGATGCATGATGGCAATATTTGCCGACTTCCTAGATGGAATAATGGAGGTCTTTATGGACGACTTCTCTGTCTGTGGAGGAAGTTTTGAAACATGTTTAGAAAACCTTGAAATGGTGCTTAAACGATGCGTAAGCGTAAACCTAGTCCTTAATTGGGAAAAATGCCATTTCATGGTTCGACAAGGAATTGTACTTGGACACATCGTATCCGATAGAGGAATCGAAGTTGATAAAGCAAAAATCGAAATTATCGAAAACCTTCAACCTCCCAAAACCGTTAGAGAAATAAGAAGTTTTCTGGGACATGCTGGTTTTTACCGACGCTTCATTAAGGATTTCTCTAAAATAACCAAACCCTTAACTGAACTACTCATGAAAGACGCCGAATTTGTTTTCACCGATAAATGCACTGAAGCATTTCAAACGCTTAAACAAGCATTGATCTCTGCGCCAATTATGCAACCTCCCGACTGGAATGAGCCTTTCGAAATAATGTGTGACGCAAGTGATTATGCTGTAGGAGCCGTTCTAGGACAAAGAAAGGATAAGACTTATGAAAGACTCATCGCCCAATTAGAAGCAAATGAATTCGAACCATACCATCCAAACTCTGAAACCGAGAAATTAGCTGAAATAGCTTTAGCCCGATCTGACGCACCTTGGTATGCAGATTTCGTAAATTACCTAGCTGCTGGTGTGCTTCCTCCTGATCTAAGCTACCAACAGAAAAAGAAATTCTTCCATGACCTAAAACATTACTATTGGGACGACCCACTCCTTTTCAAAAGAGGCCCCGATGGAATCTTTAGACGTTGTGTACCCGAGGAAGAGATAAGAAGCATAATAACACACTGTCATTCTGCACCGTGTGGAGGACACCATAGCACATCTAGAACCTGCGCCAAAATCCTTCAATCTGGACTTTTCTGGCCCAACCTGTGGAAAGACGTCTATTTTGCTGTACTAAGCTGTGATAGATGCCAACGAACTGGAAACATTTCAAGACGCGATGAAATGCCTCAAAAAGGCATTCTAGAAGTAGAAATATTTGACGTCTGGGGAATAGACTTCATGGGACCGTTTCCGTCATCGTTTGGAAATCAATATATACTCGTAGCCGTCGACTATGTTTCAAAATGGATAGAAGCTATCGCCTCTCCTACAAACGATACACGAGTAGTTATTAAACTTTTCAAAAACGTCATCTTTCCTAGGTTCGGTGTGCCAAGATTGGTAATTAGCGATGGTGGTTCCCATTTCATTTCAAGAATACTTGAGAAACTCCTTCGAAAATATGGAGTAAATCATCGAATAGCCACACCATATCATCCACAAACAAGCGGTCAAGTAGAAGTATCTAACCGTGAAATAAAACAAATATTAGAGAAAACTGTTGCTATATCGAGGAAAGATTGGTCAACCAAGCTAAATGAAGCTTTATGGGCTTATAGAACAGCTTTCAAAACTCCAATAGGAACTACCCCATTCAAACTCGTTTATGGAAAATCATGCCACCTACCAGTAGAGCTAGAACATAAAGCCTATTGGGCCATTAAGAACTTAAACCTAAACTACACTGCCGCTGGTGAGAAACGACTTCTAGACATAAACGAATTAGAAGAACTTAGACAAGACGCTTACGAAAACGCCAAAATCTATAAAGAGCGAACGAAAAAATGGCACGACAAGCGTATATCTAGGAAAAATTTTAGCATAGGCGATAAAGTGCTCTTATTTAATTCTAGGCTAAAATTATTTCCTGGTAAGTTACGATCTAGATGGTCTGGCCCTTTCGAAGTAACTAACATATTTCCGAGTGGAGCGATAGAAATCAAAGGCGAAACCGTCAAACCTTTTGTCGTAACTAGTAGACTTGGATTTGGCATTGTTATATTAAGGTCTGACAATAGAAGTAGTAGACGAAAAGCTTTTTTCGTGTTAAATTGCGAGAGGGGTGGGAAGTATGTACCAACTACCCGGGTGTTAAAGCACGATGACACGGGATCGAGAAAGTGTGTGTGTCCGTTTAAGTTGTGCGTGACTCGTAGGATTGAAGATTTGTGGCGTTTTAGCGTCATTTGTGGAGTTCATAATCATGCCTTGGAAAGCAAGTTACACGGACTTCCAATTGCTTGTCGGTTGTCCCGCAAAGAGAAGGTAGTTATTTTCGAATTATCGACAATCAAAGTGGCGCCGAGAAACATACTTTCCGATTTTAAGCGAAAAAAACCGGATAGTGTTTCAAATATCAAGCAAGTATACAATGAACGACACAATATTAAAGTCATGAAAATGGGCCCGAGGTCGGAAATGCAACATCTTTTGAAACTTTTGGGCGATAACCAATAG 2844 0.4065 MHRIMLEDDSKTSREHQRRINPIMSDVVKKEIQKLLEAGIIYPISDSKWVSPVHVVPKKGGVTVITNAKGESVAQRTQTGWRMCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMAIFADFLDGIMEVFMDDFSVCGGSFETCLENLEMVLKRCVSVNLVLNWEKCHFMVRQGIVLGHIVSDRGIEVDKAKIEIIENLQPPKTVREIRSFLGHAGFYRRFIKDFSKITKPLTELLMKDAEFVFTDKCTEAFQTLKQALISAPIMQPPDWNEPFEIMCDASDYAVGAVLGQRKDKTYERLIAQLEANEFEPYHPNSETEKLAEIALARSDAPWYADFVNYLAAGVLPPDLSYQQKKKFFHDLKHYYWDDPLLFKRGPDGIFRRCVPEEEIRSIITHCHSAPCGGHHSTSRTCAKILQSGLFWPNLWKDVYFAVLSCDRCQRTGNISRRDEMPQKGILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWIEAIASPTNDTRVVIKLFKNVIFPRFGVPRLVISDGGSHFISRILEKLLRKYGVNHRIATPYHPQTSGQVEVSNREIKQILEKTVAISRKDWSTKLNEALWAYRTAFKTPIGTTPFKLVYGKSCHLPVELEHKAYWAIKNLNLNYTAAGEKRLLDINELEELRQDAYENAKIYKERTKKWHDKRISRKNFSIGDKVLLFNSRLKLFPGKLRSRWSGPFEVTNIFPSGAIEIKGETVKPFVVTSRLGFGIVILRSDNRSSRRKAFFVLNCERGGKYVPTTRVLKHDDTGSRKCVCPFKLCVTRRIEDLWRFSVICGVHNHALESKLHGLPIACRLSRKEKVVIFELSTIKVAPRNILSDFKRKKPDSVSNIKQVYNERHNIKVMKMGPRSEMQHLLKLLGDNQ 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05274 947 Pfam Integrase core domain 516 609 IPR001584 GO:0015074
Vivi2g05274 947 Pfam RNase H-like domain found in reverse transcriptase 297 355 IPR041577 -
Vivi2g05274 947 CDD RT_LTR 39 234 - -
Vivi2g05274 947 Gene3D - 402 495 - -
Vivi2g05274 947 Coils Coil 701 721 - -
Vivi2g05274 947 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 78 233 IPR000477 -
Vivi2g05274 947 Pfam Integrase zinc binding domain 438 495 IPR041588 -
Vivi2g05274 947 Gene3D - 99 234 IPR043128 -
Vivi2g05274 947 SUPERFAMILY Ribonuclease H-like 514 662 IPR012337 -
Vivi2g05274 947 Gene3D - 243 337 IPR043128 -
Vivi2g05274 947 FunFam Transposon Ty3-G Gag-Pol polyprotein 244 334 - -
Vivi2g05274 947 ProSiteProfiles Integrase catalytic domain profile. 501 668 IPR001584 GO:0015074
Vivi2g05274 947 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 2 347 - -
Vivi2g05274 947 SUPERFAMILY DNA/RNA polymerases 2 374 IPR043502 -
Vivi2g05274 947 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 2 159 - -
Vivi2g05274 947 Gene3D - 511 711 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05274 Vivi-Chr2 176636724 176656856 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi2g05274 RVT_1 3.4e-23 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05274 - - vvo:131650722 1947.17