Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05270 ATGTCCTTGTTAACGGTGGCGCATCAGAGAGGCTCAGGTGAGTTCACCGGATTCACGGTGAAACGCAACGGCGAAGATCACGACGGCGGTGGTAATGATGATAGAGAAAGAAATGAAATGGTTTCAGCTCTTACACATGTTGCATCATCAGGGTCTAATCAAATGAGTAATACTAATAGTGAATGGATTCAAAGAAGTAGTTTTCCTTTGATGTCAAGTTCTGGAAATGCATCATCATCTTTATCTTCATTTTATTCTTCGGGTTCGGGATCAGGCTCGGGGTTATTCGTGCCGTCTGGATCATGGATTGGTCACAAAAGAGAGCGTGATGAAGAAAGTAGTGATTCTAATCAGTTTGTTACACAAAATGTTCCTAAACTATTTAGAACTGTTATGGTACCTTCTCAAGGACAAAGAGAATCATCTTCATCATCAGTAACTGAAGAAGCTCCAGCCAGAACAACCATTGCTGCCGCCACCACATCAACACCGACACCGCCGTCATTCGAAGAAAGCGGCGAGACAAGAAGAAGATACCGAGGAGTTCGCCAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCAGCAAGAGTCTGGCTAGGAACATTCGACACAGCAGAAGCAGCAGCAAGAGCTTACGACGAAGCCGCATTGAGATTCCGAGGAAGCCGAGCGAAACTCAACTTCCCCGAAAATGTTAGATCAATTATACCGCCGCAGCCACAACCACAACCACAATCACTATCACAACTTCAATCTTTCCCGGCCGCGGCTGTTCCCTCTCGAACACAGCCGCAGCCGGCATTTCAAGGCTCATCTGATATACTCAGAGACTATTTAGAATACTCACAGATTCTTCAAAGTTCTGGTGATTTTCAACTACAACAAATGCAACAGTTACAACAACAGCAACAGCAATTACAAGCTTCGAATTTGGTTCAACAATGGTATTACAATTCACAATTGGCAGCACTTCAATCTTCATCAGCTTCATTTTCACCATCTACTCAACTTTCCAATTCCTCTGCTTCATTTCCTCTGTTTTCTAGTCAACAAATGGAATTTTTCCGACCGCCGGAAAACCGTCCGCCTGGTGGCGGCCGAGGCGGAGGATCGGTGTTTTCGCCGACAACTTGGTCGGATACTAGTGGTCTTCCACCACCACCTTATGGTTGA 1191 0.4534 MSLLTVAHQRGSGEFTGFTVKRNGEDHDGGGNDDRERNEMVSALTHVASSGSNQMSNTNSEWIQRSSFPLMSSSGNASSSLSSFYSSGSGSGSGLFVPSGSWIGHKRERDEESSDSNQFVTQNVPKLFRTVMVPSQGQRESSSSSVTEEAPARTTIAAATTSTPTPPSFEESGETRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRSIIPPQPQPQPQSLSQLQSFPAAAVPSRTQPQPAFQGSSDILRDYLEYSQILQSSGDFQLQQMQQLQQQQQQLQASNLVQQWYYNSQLAALQSSSASFSPSTQLSNSSASFPLFSSQQMEFFRPPENRPPGGGRGGGSVFSPTTWSDTSGLPPPPYG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05270 396 MobiDBLite consensus disorder prediction 355 396 - -
Vivi2g05270 396 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Vivi2g05270 396 MobiDBLite consensus disorder prediction 134 180 - -
Vivi2g05270 396 MobiDBLite consensus disorder prediction 251 275 - -
Vivi2g05270 396 PANTHER DNA-BINDING DOMAIN 129 316 IPR044808 GO:0003700|GO:0009873
Vivi2g05270 396 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Vivi2g05270 396 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Vivi2g05270 396 MobiDBLite consensus disorder prediction 134 170 - -
Vivi2g05270 396 Gene3D AP2/ERF domain 177 237 IPR036955 GO:0003700|GO:0006355
Vivi2g05270 396 FunFam Ethylene-responsive transcription factor 2 177 236 - -
Vivi2g05270 396 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Vivi2g05270 396 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Vivi2g05270 396 CDD AP2 186 237 IPR001471 GO:0003700|GO:0006355
Vivi2g05270 396 MobiDBLite consensus disorder prediction 15 36 - -
Vivi2g05270 396 MobiDBLite consensus disorder prediction 20 36 - -
Vivi2g05270 396 MobiDBLite consensus disorder prediction 239 275 - -
Vivi2g05270 396 Pfam AP2 domain 178 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05270 Vivi-Chr2 176371251 176373192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05270 167 239 AP2-EREBP Transcription Factor Family AT5G61890 77.027 2.27e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05270 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05270 - - psat:127127635 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05270 2 176371251 176373192 Vivi2g05270 2 176371251 176373192 ECH
Vivi3g02256 3 37181479 37182935 Vivi2g05270 2 176371251 176373192 PCT