Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05258 ATGTCCTTGTTAACGGTGGCGCATCAGAGAGACTCAGGTGAGTTCACCGGATTCACGGTGAAACGCGACGGTGAAGATCACGACGACAGTGGTAATGAAGGTGGAAATTCAATGGTTTCAAGATATAATGTTGATAGAGAAAGAAATGAAATGGTTTCAGCTCTTACACATGTTGCATCATCAGGGTCTAATCAAATGAGTAATACTAATAGTGAATGGATTCAAAGAAGTAGTTTTCCTTTGATATCAAATTCTGGAAATGCATCATCATCTTTATCTTCATTTTATTCTTCGGGTTCGGGATCAGGCTCGGGGTTATTCGTGCCGTCTGGATCATGGATTGGTCAGAAAAGAGAGCGTGATGAAGAAAGTAGTGATTCTAATCAGTTTGTAACACAAAATGTTCCTAAACTCTTTAGAACTGTTATGGTACCTTCTCAAGGACAAAGAGAATCATCTTCATCATCAGTAACTGAAGAAGCTCCAGCCACAACAACCATTGCTGCCGCCACCACATCAACACCGCCACCACCGTCATTCGAAGAAAGCGGCGAGACAAGAAGAAGATACCGAGGAGTTCGCCAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCAGCAAGAGTCTGGCTAGGAACATTCGACACAGCAGAGGCAGCAGCAAGAGCTTACGACGAAGCCGCATTGCGATTCCGAGGAAGCCGAGCGAAACTCAACTTCCCCGAAAATGTTAGATCAATTATACCGCCGCAGCCACAACCACAACCACAATCACTATCACATCTTCAATCTTTCCCGGCCGCGGCTATTCCCTCTCGAATACAGCCGCAGCCGGCATTTCAAGGCTCATCTGATATACTCAGAGACTATTTAGAATACTCACAAATTCTTCAAAGTTCCGGTGATTTTCAACTAGAACAAATGCAACAGTTACAACAACAGCAACAACAATTACAAGCTTCGAATTTGGTTCAACAATGGTATTACAATTCACAATTGGCAGCACTTCAATCTTCATCAGCTTCATTTTCACCATCTACTCAACTTTCCAATTCCTCTGCTTCATTTCCTCTGTTTTCTAGTCAACAAATGGAATTTTTCCGGCCGCCGGAAAACCGTCCGCCTGGTGGAGGCCGAGGCGGAGGATCGGTGTTTCCGCCGACAACTTGGTCAGATACTAGTGGTCTTCCACCACCACCTTATGGTTGA 1224 0.4453 MSLLTVAHQRDSGEFTGFTVKRDGEDHDDSGNEGGNSMVSRYNVDRERNEMVSALTHVASSGSNQMSNTNSEWIQRSSFPLISNSGNASSSLSSFYSSGSGSGSGLFVPSGSWIGQKRERDEESSDSNQFVTQNVPKLFRTVMVPSQGQRESSSSSVTEEAPATTTIAAATTSTPPPPSFEESGETRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRSIIPPQPQPQPQSLSHLQSFPAAAIPSRIQPQPAFQGSSDILRDYLEYSQILQSSGDFQLEQMQQLQQQQQQLQASNLVQQWYYNSQLAALQSSSASFSPSTQLSNSSASFPLFSSQQMEFFRPPENRPPGGGRGGGSVFPPTTWSDTSGLPPPPYG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05258 407 MobiDBLite consensus disorder prediction 145 191 - -
Vivi2g05258 407 MobiDBLite consensus disorder prediction 15 32 - -
Vivi2g05258 407 FunFam Ethylene-responsive transcription factor 2 188 247 - -
Vivi2g05258 407 CDD AP2 197 248 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 MobiDBLite consensus disorder prediction 15 39 - -
Vivi2g05258 407 Gene3D AP2/ERF domain 188 248 IPR036955 GO:0003700|GO:0006355
Vivi2g05258 407 SMART rav1_2 189 252 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 ProSiteProfiles AP2/ERF domain profile. 189 246 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 Pfam AP2 domain 189 238 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 PRINTS Ethylene responsive element binding protein signature 212 228 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 PRINTS Ethylene responsive element binding protein signature 190 201 IPR001471 GO:0003700|GO:0006355
Vivi2g05258 407 MobiDBLite consensus disorder prediction 366 407 - -
Vivi2g05258 407 MobiDBLite consensus disorder prediction 145 180 - -
Vivi2g05258 407 PANTHER DNA-BINDING DOMAIN 136 327 IPR044808 GO:0003700|GO:0009873
Vivi2g05258 407 SUPERFAMILY DNA-binding domain 189 247 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05258 Vivi-Chr2 175964206 175966434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05258 178 250 AP2-EREBP Transcription Factor Family AT5G61890 77.027 2.91e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05258 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05258 - - psat:127127635 521.161