Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05236 ATGAAGAGTAGTTTGCTAGGGTTTATGGCAATCTTGGAAAAACATAAACCTTATGTTTCCATGATCTTTATTCAATTCATATATGCTGGAATGGCTCTTCTTTCAAAGGCAGCAATTTCCAAAGGAATGAGTCCTTATGTGTTTGTTGTTTATAGACAAATCTTTGCATCACTTGCTTTATTTCCATTTGCTTATTTTGACAGTAAGCATGGTGCTCCATTATCATGCAACTTGTTGTGCAAATTGTTTCTAGTTTCATTTGTTGGGTTAACAGCAAGTTCAAACCTTTACTATGTTGCAATCAACTATACCTCTGCAACATTTGCTGCTGCTTGCACAAACACAATCCCTTCAATTACTTTCATCATGGCAATTTTAATTGGGGTTGAAACCATTTCAATAAAATACAAGCATGGAGTTGCAAAGATTTTGGGCTCTGTTCTAAGCCTTTCTGGTGCTATAGTATTTGCTTTAGTTAAAGGACCACCGTTAGATTTCTTAAGATGGAATTCAGAAAATCAAAATCATAATATTCATGAATTCTCAAAAGTTCATTCCAAAGGAGATAATATTAAAGGATCTCTTATGATGCTCTCAGCAAACACTTGTTGGTCCTTATGGCTTATTTTGCAGGGATTTATTGTAAAGCAATACCCAGCAAAATTTAGGCTGACAATGATACAATGCCTTTTTAGCTTCATACAATCAGGAATATTAGCTATTGTAATGGAGAGGAATCCCTCTGCATGGAAGCTAGGATGGGATATTCATCTTCTTTCAGTGGCTTATTGTGGTGTAATTGTAACTGGCATTTGTTATTGGCTCCAAGTATGCACTATAGAGACGAAAGGTCCAGTTTTCACTGCCATGTTTACCCCTCTAGCTCTTGTACTTACAGCAATTTTCTCAGCAATTTGGTGGAAAGAAACACTCTTCTGGGGAAGTATTGGTGGCACTGTTTTGCTAGTTATTGGGCTGTATAGTGTATTGTGGGGGAAGAATAAGGAGTGTGTAAAACAAGTAGTACAAGAAAAAGCAGAAACTAGATTGGAGTGCGTTATACAGTCTGATGGATTTGACACAGTTTAA 1089 0.3646 MKSSLLGFMAILEKHKPYVSMIFIQFIYAGMALLSKAAISKGMSPYVFVVYRQIFASLALFPFAYFDSKHGAPLSCNLLCKLFLVSFVGLTASSNLYYVAINYTSATFAAACTNTIPSITFIMAILIGVETISIKYKHGVAKILGSVLSLSGAIVFALVKGPPLDFLRWNSENQNHNIHEFSKVHSKGDNIKGSLMMLSANTCWSLWLILQGFIVKQYPAKFRLTMIQCLFSFIQSGILAIVMERNPSAWKLGWDIHLLSVAYCGVIVTGICYWLQVCTIETKGPVFTAMFTPLALVLTAIFSAIWWKETLFWGSIGGTVLLVIGLYSVLWGKNKECVKQVVQEKAETRLECVIQSDGFDTV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05236 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 334 - -
Vivi2g05236 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
Vivi2g05236 362 Pfam EamA-like transporter family 16 150 IPR000620 GO:0016020
Vivi2g05236 362 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020
Vivi2g05236 362 PANTHER WAT1-RELATED PROTEIN 16 342 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05236 Vivi-Chr2 175484432 175489532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05236 12 336 Nodulin-like Gene Family AT2G39510 40.549 8.83e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05236 - - lja:Lj0g3v0009669.1 571.622