Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05223 ATGTATTCTAGTGTCTATGGAGGTATCATACTTGTTCCAGCAATGATGGTCATCCCTATAGATGATCACATGGAAGGTGCATCAGAAGCAGACCTTAGTATACTTCCAAAATACAGATTTCGATTATTAAACAATGAGGAGAAGGCTAGCGGTGGAGCTGGATCGATGATTCCCACACAAACCTCCAGTGGATACTTGGCTAATGAACAAATACTTTTACCTGAGGATACAGTTAATGGGGCTGCTGATCATCTTCTTCGGTCCCTTCTTGGAAGTCAGATTCACTATTATCCAATAGACCAATATAAGTGTGTTCTTAGTTACCCTGATGTTGTTGCTCTTGAAGAGTGGATTAGCCCAAAAGATTTTTCGACTGATGAAAGGTTGATTCCAAAGTGGCATATTCCTTGTGATGAATAA 420 0.4 MYSSVYGGIILVPAMMVIPIDDHMEGASEADLSILPKYRFRLLNNEEKASGGAGSMIPTQTSSGYLANEQILLPEDTVNGAADHLLRSLLGSQIHYYPIDQYKCVLSYPDVVALEEWISPKDFSTDERLIPKWHIPCDE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05223 139 PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 69 139 IPR035309 GO:0016504|GO:0070577|GO:0070628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05223 Vivi-Chr2 175461789 175465005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05223 25 77 C3H Transcription Factor Family AT1G68070 66.038 1.60e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05223 K06699 - vvo:131647492 238.81