Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05222 ATGCTAGGGGACTCAGCAGTGTTAGGAACAGGAGGAGGAGGAGGAGGAAGCTCAGGAGATGGAGCAGGAGCATCAGCATCAGCCGGAGCTTATCATGACGGCGGCGACACGGTGGCTGGTGGCGGTGGATCAATTTCAGGAGATGATGAAAGAGGAGGTGGTAGTAGAAATGAAGAGGGTGGTGATAGAAATTTTGGTGGTAATAGATGGCCAAGACAAGAAACTATTGCTTTGTTGAAGATAAGGTCTGAAATGGATGTCACTTTTAGAGATGCAAGTGTTAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAAATGGCAGATCTTGGATATCACAGAAATTCCAAAAAATGCAAAGAAAAATTTGAGAATGTTTACAAGTATCACAAGAGAACCAAAGAAGGAAGAGGTGGAAAATCAGAAGGCAAAACTTATAGATTTTTTGATCAATTACAAGCCCTTGAAAATAACCCTTCAATTCAATCACCAAGGGTGCCACAAACACAGTTGAATATTTCAACATTACCTCCAACAACACCTTCATCATCATCATTACCAATTTCAACTACATCAACTACACCTACAACCACAAATCCATTGCTATTGCCACCTTCTATTACTATTCACACCCCTTCCATCACCACCACCGCCGCGGCCACCACTGTTCCATCGACAACCACAATTACACCACCAATAGCAATGTCTTTACCTCAAGTTCAAAACGTTGTCTCACAATCCAACCCTACATATTTTCCATCAATACCACCCACAACAACAATAATAGCTACAAACACCAATAACCAAATTACCATTACACCTCCACCATCTTCATTTCCCAACATTTCAACTGAATTCTTTTCGAATTCGAGTTCATCTTCAACTTCTTCAGAGGAAACAACGACAATGGAAGGCGGGGGAAACCGGAGGAAACGGAAGAGGAAATGGAAGGATTTCTTTGAGAGACTAATGAAGGAAGTTGTTGAGAAACAAGAGGAGCTGCATAAGAGATTCTTGGAAGCTATTGAGAAAAGAGAATTGGAGAGAGGTGCTAGAGAAGAAGCTTGGAGGTTGCAAGAGATGCAAAGGATTAATAGAGAAAGGGAAATTCTGGCTCAAGAGAGATCTATTGCTGCTGCCAAAGATGCTGCTGTTATGGCTTTTTTACAAAAGATTGCTGATCAGCAACAAGAGCAACAGCAAAATATCGGTGTTCCTGTTGCATTGAACACCAGCATTGCTCCTCAACAACAGCAACCGCCACAAGAACCGACACCAGCACCAGCATCAGCACCAGCACCAGCACCAGCACCGACGCCAACACCAATGCCGACTCCGACTTCAGCACCTGCATCAGCACCAGTGTCATTGCCGATAACAATACAGCCACAGCAACAAGTTCAAACTCCGACTTCAGTAGTGCAAGTGCAACAAACAGCACCAGCAGCACCAGTTATTTCTCAGGCTTCACCGCTGCCGCAACAACAACAGGTTCAGGTTCAAGTTCAGCGGCAAGCAAATATGGACATTGTGAAAAGTGACAACAATGGTGAGAGTTTGATGCAAGCAAGTTCATCAAGGTGGCCGAAAACCGAGGTTGAGGCATTGATAAGGCTGAGAACAACTCTTGATATGAAGTATCAAGAAAATGGACCTAAGGGGCCATTATGGGAGGAGATTTCAGGGTTGATGAAGAATCTGGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAATATCAACAAATACTTCAAGAAAGTGAAGGAGAGCAACAAGAAGAGGCCAGAAGATTCAAAGACATGTCCGTATTTTCACCAACTCGATGCTCTATATCGGGAGAAGAACAAGGGCGAAGGCACCAGCGCGTCAAGGCCCGAGGGAACAATGATGGCACCATTGATGGTGCGGCCAGAACAGCAATGGCCTCCACAGCCACAACCGCCACCAGTAACTGGGGCAGATGTGACCATGGAGGATGCTGAGAATGACCGGCCTCACCGTGATGATGAAGAGTATTATGACGATGACGACGGTGATGAAGAAGATGAAGACGAAGGAAGTGACAACTATGAAGTGGTTGCAAGCAAACCACCACCACCTCAATAA 2112 0.4479 MLGDSAVLGTGGGGGGSSGDGAGASASAGAYHDGGDTVAGGGGSISGDDERGGGSRNEEGGDRNFGGNRWPRQETIALLKIRSEMDVTFRDASVKGPLWDEVSRKMADLGYHRNSKKCKEKFENVYKYHKRTKEGRGGKSEGKTYRFFDQLQALENNPSIQSPRVPQTQLNISTLPPTTPSSSSLPISTTSTTPTTTNPLLLPPSITIHTPSITTTAAATTVPSTTTITPPIAMSLPQVQNVVSQSNPTYFPSIPPTTTIIATNTNNQITITPPPSSFPNISTEFFSNSSSSSTSSEETTTMEGGGNRRKRKRKWKDFFERLMKEVVEKQEELHKRFLEAIEKRELERGAREEAWRLQEMQRINREREILAQERSIAAAKDAAVMAFLQKIADQQQEQQQNIGVPVALNTSIAPQQQQPPQEPTPAPASAPAPAPAPTPTPMPTPTSAPASAPVSLPITIQPQQQVQTPTSVVQVQQTAPAAPVISQASPLPQQQQVQVQVQRQANMDIVKSDNNGESLMQASSSRWPKTEVEALIRLRTTLDMKYQENGPKGPLWEEISGLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGTSASRPEGTMMAPLMVRPEQQWPPQPQPPPVTGADVTMEDAENDRPHRDDEEYYDDDDGDEEDEDEGSDNYEVVASKPPPPQ 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05222 703 MobiDBLite consensus disorder prediction 1 69 - -
Vivi2g05222 703 SMART sant 66 128 IPR001005 -
Vivi2g05222 703 SMART sant 523 585 IPR001005 -
Vivi2g05222 703 CDD GT1 68 133 - -
Vivi2g05222 703 Gene3D - 70 131 - -
Vivi2g05222 703 Gene3D - 527 588 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 418 450 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 659 673 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 674 690 - -
Vivi2g05222 703 CDD GT1 525 590 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 414 453 - -
Vivi2g05222 703 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Vivi2g05222 703 FunFam Trihelix transcription factor GT-2 70 131 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 51 65 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 170 202 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 285 302 - -
Vivi2g05222 703 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Vivi2g05222 703 Pfam Myb/SANT-like DNA-binding domain 525 612 IPR044822 -
Vivi2g05222 703 ProSiteProfiles Myb-like domain profile. 525 583 IPR001005 -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 285 312 - -
Vivi2g05222 703 MobiDBLite consensus disorder prediction 639 703 - -
Vivi2g05222 703 FunFam Trihelix transcription factor GT-2 527 588 - -
Vivi2g05222 703 PANTHER FI21293P1 45 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05222 Vivi-Chr2 175405213 175408888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05222 505 643 Trihelix Transcription Factor Family AT1G76880 66.013 8.41e-60 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi2g05222 Myb_DNA-bind_4 4.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05222 - - psat:127127275 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05222 2 175405213 175408888 Vivi2g05222 2 175405213 175408888 ECH
Vivi2g05222 2 175405213 175408888 Vivi1g04515 1 96492146 96495612 PCT