Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05216 ATGGACCCTAAGTTCATCGGAAAATCACCGCCGGTAATAATCGACCTAGACCGCATGCCGGAGCGTGGCTCCCACCACCGTCGCTCCCACTCCGACACTTCCTTCCGTTTCGCCGCCAACTTCGACGACCTTCTCCTCTTCGACCCCTCCGACTTCGACATCTCCAACCTCCCTCTTCCGTCTCCTGTCTCCGACGCCGTCCCGATGACGGTCGATTCGGATGAGTCCAACGGGAAGTCTAGTCACCTCCGGAGCTTGTCTGTGGATTCTGAGTTTTTTGATGGATTAGGGTTTTCGGGAGGCGGTGAGGAGAAAGTTGAAGAGAGGAAGGTGAACCGTCATAGGCATAGTAATTCGATGGATGGTTCTTCGGCGACGTCGTTTGATGGCGAGTATTCTGTGGGGATGGTTGATGGTGTGAAGAAATCTATGCCGCCGGAGAAGCTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGATTCTTGCGAATAGGCAATCTGCTGCTCGATCAAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAGGTGCAAACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTAACCATCCTTCAGAGAGACACCACTGATTTGAGTGCTCAGAATAAGGAGCTCAAGATGAAGTTAGAGGCTTTCGAACAGCAAGCACAGCTTAGAGAAGATCTCAACGAAGCATTGAAGAAAGAACTGCAACGCCTTAGGGCGCAGAAGAATCATTTGATTGCCGTCACTGGCAATCCTTCTTATAATGGGATGTTCTCCCAATTTTCTACACAATTAACCATGCAAGATATGAGTAATCCTCAACCCCAGCAGGCACGATCTGGCATGCCGCCTTCTCGTTCCGATCAACCTTTCAATGGTCTTGGACGATCTAACTTCATGGACTTCAATCAACAGAAGTAG 948 0.4916 MDPKFIGKSPPVIIDLDRMPERGSHHRRSHSDTSFRFAANFDDLLLFDPSDFDISNLPLPSPVSDAVPMTVDSDESNGKSSHLRSLSVDSEFFDGLGFSGGGEEKVEERKVNRHRHSNSMDGSSATSFDGEYSVGMVDGVKKSMPPEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTILQRDTTDLSAQNKELKMKLEAFEQQAQLREDLNEALKKELQRLRAQKNHLIAVTGNPSYNGMFSQFSTQLTMQDMSNPQPQQARSGMPPSRSDQPFNGLGRSNFMDFNQQK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05216 315 Gene3D - 157 209 - -
Vivi2g05216 315 SUPERFAMILY Leucine zipper domain 158 210 IPR046347 GO:0003700|GO:0006355
Vivi2g05216 315 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 289 - -
Vivi2g05216 315 Coils Coil 181 257 - -
Vivi2g05216 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 219 IPR004827 GO:0003700|GO:0006355
Vivi2g05216 315 MobiDBLite consensus disorder prediction 103 117 - -
Vivi2g05216 315 FunFam Transcription factor VIP1 157 210 - -
Vivi2g05216 315 MobiDBLite consensus disorder prediction 103 127 - -
Vivi2g05216 315 Pfam bZIP transcription factor 158 216 IPR004827 GO:0003700|GO:0006355
Vivi2g05216 315 CDD bZIP_plant_RF2 159 208 IPR044759 GO:0003700|GO:0006355
Vivi2g05216 315 MobiDBLite consensus disorder prediction 276 315 - -
Vivi2g05216 315 SMART brlzneu 154 218 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05216 Vivi-Chr2 175185393 175190280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05216 7 294 bZIP Transcription Factor Family AT1G43700 48.943 2.45e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi2g05216 bZIP_1 4.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05216 K20557 - gmx:778142 412.92