Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05184 ATGGAGGATTATTGGAGCATGATTTGTTCTGAGAATGGACAAAATCTTTTCAGTTATGATTTCAAGTTTTTGAAAGATCCTTCTTCATGCATCAACCACTTGTTGCTCATTTTCTTTGATTTATTCATGTTAATCATGTTATCAATCATAATGTTCCTAAAGTCTTCTTCAAGACCCTTTCGGAGTACAGCAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAACCGATGGCTCTATTGGGTTGTTGCATTTATGCTTAGGAGTTTGGGTTTTAGAGGAGAAGTTAAGGAAAAACCACAATGTCTTTCCTCTTAACTGGTTGTTACGAGAACTCTTTCAAGGACTCACATGGTTGGTTGTAGGTTTAACCATAAGTCTTCAGATAAAACAACTCTCAAGAGTATGGTTGTGGCTGTTTTCCATTCTCATGTTCTTTGTTTCTAGTATATTATGTGTTCTATCGATGTCGTATGCTATTCGAAGCAGAGAACTGTCCCTCGCGGCGACTTTAGATGTTATATCTTTTCCAGGAGCAATCTTGCTGATGTTATGCACTTATAAAGCATCTAAATGTGAAGATACTGTCAGAGACACTACCGAAAGCCTTTATGCTCCGTTAAATGGTGAGTTTAACGATGTTGTTCCTGATAACAATGTAACCTTATTTGCGAAAGCTGGATTCTTTAGTAAGATATCGTTTTGGTGGTTGAATCCATTGATGAAAAAGGGACAAGAAAAAACACTTCAAGACGAGGATATTCCAACGTTACAAGAGTCTGAACGAGCAGAGAGTTGTTATTTGTCGTTTGTAGAACAAGTAAACAGACAGGGAGAAAATGAACCATCATCGCATTCTTCGGTACTATGGACAATTGTTTTATGCCACTGGAAAGAGATCTTTATGACAGGATTCTTTGCTTTGATCAAGGTACTTGCTGTGTCTTGTGGCCCTCTACTTCTGAATGCCTTCATATTGGTTTCTGAGGGTAATGAAAGCTTCAAATATGAAGGTTATGTGTTGGTCATATCACTCTTCATCATGAAGATCGTAGAATCCCTATCACAAAGACAATGGTATTTCCGAAGTAGAATTGTTGGGATGAAAGTTAGATCGCTACTTACTGCAAGTATTTATAGAAAAACATTACGGTTATCTAATTCTTCTAGATTGATTCACTCTAGCGGTGAGATAATGAATTATATGACTGTGGATGCTTATAGAATCGGAGAATTTCCATTTTGGTTTCACCAGACATGGACAACAATCCTCCAATTGTGTATTGCGTTAGTAATTCTTTTCCGAGCAATTGGACTAGCAACAATAGCTTCATTGGTGGTTATAGTTCTCACCGTGCTTTGCAACACTCCAATAGCAAAGTTACAACACAAGTTTCAGAGCGAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTAAAGCTATACGCGTGGGAAAGCCGTTTTAAAAATGCTATAGAAAAGTTAAGAAATGTGGAACTCAAATTGATATCTGCAGTGCAATCAAGTAAGGCGTACCTTCTCTTTCTATTTTGGACCTCGCCGGTGTTGGTGTCTGCTGCTTCATTTCTAGCATGTTACTTCCTTGAAGTTCCTTTGCATGCAAGTAATGTTTTCACTTTTGTGGCAACTTTACGCCTGGTTCAAGAGCCCATTACTGGTATCCCGGATGTACTTACGGTGATCATTCAAGCAAAAGTTGCATTTGCTCGGGTTCGTAATTTCCTTGAGGCACAAGAACTACAGGGTGCAAATTTCAAGAGCAGGTGCTTTAATGACAACCTCAAAGGCTCGGTTTTAATAAAATCAGCCGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGACACATAAATTTGGACGTTAAACACGGGCAAAAAGTGGCTATTTGCGGAGAAGTTGGCTCTGGAAAATCAACTCTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTGGTGTTTATGGGAAGTTTGCATATGTTTCCCAAACAGCATGGATCCAAACAGGTACAATACAAGAAAATATTTTGTTTGGATCCGAGTTTGATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCATTGGTGAAGGACCTTGAGTTGCTTCCCTTTGGAGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAACAGCGAATTCAACTAGCCCGAGCTCTTTATGAGAACGCTGATATATATCTATTGGACGATCCGTTTAGTGCAGTTGATGCACATACTGCAAAAAATTTATTTAATGAGTACATCATGGAAGGACTCAAAGGGAAAACTGTCCTACTTGTGACTCATCAAGTTGATTTTCTCCCAGCATTTGATTTTGTTTTGTTGATGTCAGATGGGGTAATCCTAGAAGCTGGTCCATTTCACTACCTATTGACAAGAAGCCGAAAATTCCAGGACCTTGTCAATGCTCACAAGGAGACCGCAGGTTCAAACCAGCTTGTGAATGTTACTATTTCGAAGGAATATTCAACTTCTAGAAAGGTTACACGGACTTTCATGGAAAAGCAGATCAAAGAAACAAACGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGAAAGGAGACATAGGATTAAAGCCTTACTTACAATATATGAATCGGATGAAAGGCTATATATTCTTCTTTGTGGCTTCACTCGGTCACCTTATGTTTATGGTTTGTCAGATATTGCAAAACTCATGGATGGCTTCTAATGTAGACAATCCTCGTGTTAGCACGTTGCAGTTGATTTTAGTTTATTTCCTAATTGGAGTTTCTTCGACCTTTTTCGCATTGATCAGAAGTCTATATGTAGTTGCTTTGGGACTTCAATCTTCAAAACACTTTTTCCTACAGTTGATGAACTCCCTCTTTCGTGCACCAATGTCTTTCTATGACTCTACACCATTGGGAAGGATACTAAGTAGGGTTTCATCTGATTTGAGCATTATGGATCTTGACGTTCCATTTAGCCTCACTTTTGTCGTGGGATCGAATATAACTTTTTATTCGAGTCTTACGGTTTTAGCTGTTGTCACTTGGCAAGTATTGATTGTAGCTATACCAATGGTTTACGTTACAATTCGCTTGCAGAAATACTACTTTGCCTCAGCAAAAGAAGTGATGCGGATGAGTGGCACAACGAAATCCTACTTAGCTAACCATGTAGCTGAAACTGTTGCAGGAGCTGTGACAATAAGGGCTTTTCACGAGGAAGATCGTTTTTTTGAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCGTTTTTTATTAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATAAGCGCGGGTCTTCTTTCCTCTGCGGCGCTTTGCATGGTTATACTTCCACCAGGGACATTCACTTCTGGATTTATTGGTATGGCTCTATCTTATGGTCTTGCACTAAATTCTTCCTTAGTATTTTCGGTTCAAAGTCAATGCACTATTGCAAATCATATAATATCAGTAGAGAGGCTAAACCAATATATGCATATACAAAGTGAGGCCGAAGAAATTGTAGAAGGAAATCGCCCTCCTTTGAATTGGCCAATTGCAGGCAAAGTAGAAATAAATGACTTAAAGATACGATACAGGCCTGATGGACCACTAGTACTTCATGGGATCACATGCACATTTGAAGCAGGTCACAAGATTGGTATTGTTGGCAGAACAGGAAGTGGGAAATCTACTCTTATTGGTGCTTTATTTCGTCTAGTGGAACCAACCGGAGGAAAAGTTGTAGTTGATGGCATAGACATATCATTGATCGGCCTTCATGATTTAAGGTCGCGTTTTGGGATTATACCTCAAGATCCTACCCTTTTTAACGGGACAGTAAGATATAACTTGGACCCTTTATGTCAACACACCGATCAAGAGATATGGGATGTTCTTGGAAAGTGTCAATTGCGAGAAGTAGTCCAAGAGAAAGACGAGGGCTTAAACTCCTCAGTTATTGAAGATGGATCAAACTGGAGCATGGGACAAAGACAGTTATTCTGTTTGGGGCGTGCTCTTTTAAGGAGAAGTAGAATTTTGGTACTGGACGAAGCAACAGCATCAATTGATAATTCAACTGATTTGATTCTACAGAAAACCATTAGAACGGAGTTTGCAGATTGTACGGTGATCACAGTAGCACACAGGATACCGACTGTGATGGATTGCACAAAGGTTCTTTCAATAAGAGATGGAAAATTGGTGGAGTATGATGATCCAATGAGCTTGATGAAGCGAGAAGAATCTTTGTTCAGGAAACTTGTCCAAGAATACTGGTCTCATTTTCAGTCTGCAGAATCACATTGA 4413 0.3904 MEDYWSMICSENGQNLFSYDFKFLKDPSSCINHLLLIFFDLFMLIMLSIIMFLKSSSRPFRSTARYSNLQLVSAITDGSIGLLHLCLGVWVLEEKLRKNHNVFPLNWLLRELFQGLTWLVVGLTISLQIKQLSRVWLWLFSILMFFVSSILCVLSMSYAIRSRELSLAATLDVISFPGAILLMLCTYKASKCEDTVRDTTESLYAPLNGEFNDVVPDNNVTLFAKAGFFSKISFWWLNPLMKKGQEKTLQDEDIPTLQESERAESCYLSFVEQVNRQGENEPSSHSSVLWTIVLCHWKEIFMTGFFALIKVLAVSCGPLLLNAFILVSEGNESFKYEGYVLVISLFIMKIVESLSQRQWYFRSRIVGMKVRSLLTASIYRKTLRLSNSSRLIHSSGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIALVILFRAIGLATIASLVVIVLTVLCNTPIAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWESRFKNAIEKLRNVELKLISAVQSSKAYLLFLFWTSPVLVSAASFLACYFLEVPLHASNVFTFVATLRLVQEPITGIPDVLTVIIQAKVAFARVRNFLEAQELQGANFKSRCFNDNLKGSVLIKSADFSWEGNVSKPTLRHINLDVKHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIGVYGKFAYVSQTAWIQTGTIQENILFGSEFDDQRYQETLQRSSLVKDLELLPFGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDFVLLMSDGVILEAGPFHYLLTRSRKFQDLVNAHKETAGSNQLVNVTISKEYSTSRKVTRTFMEKQIKETNGNQLIKQEEREKGDIGLKPYLQYMNRMKGYIFFFVASLGHLMFMVCQILQNSWMASNVDNPRVSTLQLILVYFLIGVSSTFFALIRSLYVVALGLQSSKHFFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDVPFSLTFVVGSNITFYSSLTVLAVVTWQVLIVAIPMVYVTIRLQKYYFASAKEVMRMSGTTKSYLANHVAETVAGAVTIRAFHEEDRFFEKNLDLIDINASAFFISFASNEWLIQRLETISAGLLSSAALCMVILPPGTFTSGFIGMALSYGLALNSSLVFSVQSQCTIANHIISVERLNQYMHIQSEAEEIVEGNRPPLNWPIAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGSGKSTLIGALFRLVEPTGGKVVVDGIDISLIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLCQHTDQEIWDVLGKCQLREVVQEKDEGLNSSVIEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSIRDGKLVEYDDPMSLMKREESLFRKLVQEYWSHFQSAESH 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05184 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05184 1470 Gene3D ABC transporter type 1, transmembrane domain 272 597 IPR036640 GO:0005524|GO:0016020
Vivi2g05184 1470 Gene3D ABC transporter type 1, transmembrane domain 871 1206 IPR036640 GO:0005524|GO:0016020
Vivi2g05184 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 908 1187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05184 1470 CDD ABCC_MRP_domain1 616 815 - -
Vivi2g05184 1470 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vivi2g05184 1470 CDD ABC_6TM_ABCC_D1 303 589 IPR044746 GO:0140359
Vivi2g05184 1470 FunFam ABC transporter C family member 3 1207 1459 - -
Vivi2g05184 1470 CDD ABCC_MRP_domain2 1222 1442 - -
Vivi2g05184 1470 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Vivi2g05184 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1214 1457 IPR027417 -
Vivi2g05184 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Vivi2g05184 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 839 IPR003439 GO:0005524
Vivi2g05184 1470 Pfam ABC transporter 1241 1389 IPR003439 GO:0005524
Vivi2g05184 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1224 1458 IPR003439 GO:0005524
Vivi2g05184 1470 SMART AAA_5 643 816 IPR003593 GO:0016887
Vivi2g05184 1470 SMART AAA_5 1250 1444 IPR003593 GO:0016887
Vivi2g05184 1470 FunFam ABC transporter C family member 10 284 597 - -
Vivi2g05184 1470 Gene3D - 1208 1460 IPR027417 -
Vivi2g05184 1470 FunFam ABC transporter C family member 10 598 852 - -
Vivi2g05184 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 1459 - -
Vivi2g05184 1470 SUPERFAMILY ABC transporter transmembrane region 902 1206 IPR036640 GO:0005524|GO:0016020
Vivi2g05184 1470 SUPERFAMILY ABC transporter transmembrane region 289 589 IPR036640 GO:0005524|GO:0016020
Vivi2g05184 1470 Gene3D - 611 845 IPR027417 -
Vivi2g05184 1470 FunFam ABC transporter C family member 5 873 1205 - -
Vivi2g05184 1470 Pfam ABC transporter transmembrane region 301 559 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05184 1470 Pfam ABC transporter transmembrane region 908 1148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05184 1470 CDD ABC_6TM_ABCC_D2 906 1199 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05184 Vivi-Chr2 174521741 174527923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05184 610 847 Calmodulin-binding Proteins AT2G36910 32.692 3.17e-25 112