Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05182 ATGGAAGATTACTGGAACATGATTTGTGGAGGCAAACCTATAAGTTATGATTTCAAGTTTTTGAAAGATCCTTCTTCATGCATTAACCACATGTTGCTCATTTTCTTTGATTTATTCATGTTGATCATGCTATCAATCATCATGTTCCTGAAGTTTGCCTCAAGACCCTTTTGGAGTCTAGTAAGATATTCAAACTTGCAGCTAGTTTCTGCTATAACCAATGCCTCTCATGCTTTGCTGCATTTTTGCTTAGGAATTTGGGTTTTAGTCATGAAAACTCACAAAGCCTTTCCTCTTAACTGGTGGTTGCCAGAACTGTTTCATGGACTCACATGGCTGTGTGTAACTTTTACTATAAGTCTTCACATAAAACAACTCTCAAAAGCATGGATGTGGTTGTTTTCGATTCTCATATTTCTTGTTTCTACTATATTATGTGGTTTATCGATATCATATGCAATTAGCACCAGAGAACTATCCCTCAAGGCAAGTTTAGATGCCATATCTTTCATAGGAGCAGTTTTGCTGTTGTTGTGCACTTACAGTAATGAAAGTGCTCAGATAGACGCTGTTGAAAGCCTTTGTGATCCTTTCAATCACCAGTTAACCCCATTTGCTAAAGCTGGTTTCTTTAGTAAGATATCATTTTGGTGGTTGAATCCACTGATGAAAAAGGGTCAAGAAAAAACACTTCAGGACGAGGATATTCCAAAGTTAAGAGAGTCTGAAAAAGCAGAAAGTTGTTATTTGTCGTTTGAAGAACAAATAAACAGACAAAGACAAAATGAACCATCGGTTTTTTGGACAATAGTTTTATGCCACCAAAGAGAGATTTTGATAACAGGATTCTTTGCTTTGCTCAAAGTACTTGCTATATCTTGTGGCCCTCTACTTCTAAATGAATTTATATTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTCTTCTTCATAAAGATCATAGAATCCATATCACAAAGACAATGGTATTTCCGGGGTAGGATTATTGGGATGAAAGTTAGATCACTACTTACGGCAAAAATTTATAAAAAAGTATTAAGGTTATCCAATTCAGCTAGATTGATTCACTCTAATGGTGAGATAATGAATTATATGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTCTGGTTTCATAGGACTTGGACAACAATTCTCCAATTGTCCATTGCATCAATAATTCTTTTCCGCGCAATTGGACTGGCAACATTAGCATCTCTACCAGTGATAGTTCTCACTGTGTTTTGCAATGGTCCACTAGCAAAGTTACATCACAAGTTTCATAGCAAACTTATGGCGGCACAAGATGAAAGACTGAAGGCTAGTTCTGAGGCTCTAGTGAATATGAAAGTGCTAAAGCTATATGCATGGGAAAATCATTTTAAAAATGCAATAGAAAAGTTAAGAAATGTGGAACTCAAATTTCTATTTGCAGTTCTATTAAGAAAGACATGTGTTGTCTTTCTCTTTTGGATCTCGCCAATGCTTGTATCAGCTGCTTCTTTTCTAGCATGCTATTTGCTCAAAATTCCTTTGCATGCAAGTAATGTTTTCACTTTTGTAGCAACTTTACGCCTTGTACAAGAGCTAATTACAAGCATCCCAGATGTTATTGCAGTAACTATTCAAGCAAAAGTTGCATTTGCTCGGATATGTAATTTCCTTGAGGCACCAGAACTGCATAGTTCAAATTTCAATAGCAGGTGCTTTAATGACAACCTCAAAGGCTCAGTTTTAATAAAATCAGCCGACTTTTCATGGGAAGGTAACGTATCAAAGTCAACACTAAGAAACATAAATTTGGACATTAGACCTGGACAAAAGGTGGCTATTTGTGGAGAAGTTGGTTCGGGAAAATCAACCCTCTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACGATTGATGTTTACGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGCACAATACGGGAAAATATTTTATTTGGATCTGAGTTTGATGATCAAATATATCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGACCTTGAGTTGCTTCCTTACGGTGACCTCACCGAAATAGGCGAGAGAGGAGTTAATTTGAGTGGAGGTCAAAAGCAGCGAATTCAACTCGCACGGGCTCTATATGAGAATGCTGATATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTACAAAATGTTTGTTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTAGAATTTCTACCAGTATTTGATTCTGTTTCGTTGATGTCAGATGGGGTAATCCTACAAGCTGGTCCATATCACCAGCTATTGACAACAAGCCAAGAATTCCAGGACCTTGTCAATGCTCACAAGGTTACTGCTAGTTCAAACCAGCTTGCGAACGTTACTTTTTCTCACACTTCTAGAAAGATTACTCAAGTGTTAGTGGAAAAAGAGTGTAAAGAATTGAATGGAAATCAATTAATTAAGCAAGAAGAGAGAGAGGAAGGAGACAGAGGGTTGAAGCCTTACTTACAATATCTGAATAATATGAAAGGCTATATTTTCTTCCTCGGGGCTTCGTTTTGTCACCTTATTTTTTTGGTTTCTCAGATACTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCGTGTCAGCACGTTGCAGTTGATTTTAGTTTATTTCTGGATCGGAGCTTCTTCAATACTTTTCATGTTGATCAGAAGTTCCTTTATAGTAGCTTTGGGTCTTCATTCTTCAAAATATTTATTTTTACAATTGATGAACTCCCTCTTTCGAGCACCAATGTCTTTTTACGACTCTACACCATTGGGAAGGATACTAAGTAGGGTTTCATCTGATCTGAGCATTACGGATCTTGACATGCCATTTAGCCTCCTATTTTCAGTCGGAGCCACAATAAACTTTTATTCTGTTCTTATAGTTTTAGCAATTGTCACATGGCAAGTATTGATTGTGGTTATACCAATAGTATACATTACGATTCGTCTACAGAGATACTACTTAGTCTCAGTGAAAGAAATGATGCGGATGAGCGGCACAACAAAATCCTATTTAGCTAATCATGTAGCAGAAACTGTATCCGGAGCTGTGACAATAAGAGCCTTTGAGGAGGAAGATCGTTTTTTTAAGAAGAATCTTGATCTAATTGATATTAACGCTAGTACATTTTTCCATAGTTTTGCCTCAAATGAATGGTTGATCCAACGATTAGAAACAATGAGTGCGCTTGTTCTTTCCTCTGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTCACCTCTGGATTTATCGGTCTGGCTCTGTCATATGGCCTTACACTAAATGCTTCCTTAGTATTTTCTATTCGGATTCAATGCAGTCTCGCAGATCATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCCCAAGAAATAATAGAAGACAATCGTCCTCCTTTGAATTGGCCAATTGCAGGAAAAGTAGAAATAAATGACTTGAAGATACGATACAGACCTGGTGGTCCACTTGTACTTCATGGGATCACATGCACATTTGAAGCAGGTCACAAGATTGGAATTGTTGGCAGAACAGGCAGTGGGAAGTCCACTCTTATTGGTACTTTATTTCGTCTTGTGGAACCAGAAGGAGGAAAAGTTGTAGTTGACGGCATAGATATCTCGTCTATTGGGCTTCATGATTTGAGGTCACGTTTTGGGATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTAAGATTTAATTTGGACCCTTTATCCCAACACAATGATCAAGAGATATGGGAGGTTCTTGGGAAGTGCCAACTTAGAGAAGTTGTTCAAAAGAAAGAAGAGGGCTTGAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGTATGGGACAAAGACAGTTATTCTGTTTAGGGCGTGCTCTTTTAAGGAGAAGTAGGATACTGGTACTGGATGAAGCAACTGCATCAATTGATAATTCAACTGATACGATTCTACAGAAAACCATTAGAACGGAGTTTGCAGATTGTACTGTGATCACAGTAGCACACAGAATACCTACTGTGATGGATTGCACTAAGGTTCTTTCAATCAGTGATGGAAAGTTGGTGGAGTATGACGAGCCAATGAGCTTGATGATGAGAGAAGAGTCCTTGTTTAGAAAGCTTGTCAAGGAATATTGGTCTCATTTTCAGTCTGCGGAATTGCATTGA 4338 0.3778 MEDYWNMICGGKPISYDFKFLKDPSSCINHMLLIFFDLFMLIMLSIIMFLKFASRPFWSLVRYSNLQLVSAITNASHALLHFCLGIWVLVMKTHKAFPLNWWLPELFHGLTWLCVTFTISLHIKQLSKAWMWLFSILIFLVSTILCGLSISYAISTRELSLKASLDAISFIGAVLLLLCTYSNESAQIDAVESLCDPFNHQLTPFAKAGFFSKISFWWLNPLMKKGQEKTLQDEDIPKLRESEKAESCYLSFEEQINRQRQNEPSVFWTIVLCHQREILITGFFALLKVLAISCGPLLLNEFILVSEGNESFKYEGYVLAISLFFIKIIESISQRQWYFRGRIIGMKVRSLLTAKIYKKVLRLSNSARLIHSNGEIMNYMTVDAYRIGEFPFWFHRTWTTILQLSIASIILFRAIGLATLASLPVIVLTVFCNGPLAKLHHKFHSKLMAAQDERLKASSEALVNMKVLKLYAWENHFKNAIEKLRNVELKFLFAVLLRKTCVVFLFWISPMLVSAASFLACYLLKIPLHASNVFTFVATLRLVQELITSIPDVIAVTIQAKVAFARICNFLEAPELHSSNFNSRCFNDNLKGSVLIKSADFSWEGNVSKSTLRNINLDIRPGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVYGKFAYVSQTAWIQTGTIRENILFGSEFDDQIYQETLQRSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTTKCLFNEYIMEGLKGKTVLLVTHQVEFLPVFDSVSLMSDGVILQAGPYHQLLTTSQEFQDLVNAHKVTASSNQLANVTFSHTSRKITQVLVEKECKELNGNQLIKQEEREEGDRGLKPYLQYLNNMKGYIFFLGASFCHLIFLVSQILQNSWMAANVDNPRVSTLQLILVYFWIGASSILFMLIRSSFIVALGLHSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSITDLDMPFSLLFSVGATINFYSVLIVLAIVTWQVLIVVIPIVYITIRLQRYYLVSVKEMMRMSGTTKSYLANHVAETVSGAVTIRAFEEEDRFFKKNLDLIDINASTFFHSFASNEWLIQRLETMSALVLSSAALCMVILPPGTFTSGFIGLALSYGLTLNASLVFSIRIQCSLADHIISVERLNQYMHIQSEAQEIIEDNRPPLNWPIAGKVEINDLKIRYRPGGPLVLHGITCTFEAGHKIGIVGRTGSGKSTLIGTLFRLVEPEGGKVVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRFNLDPLSQHNDQEIWEVLGKCQLREVVQKKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDTILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMSLMMREESLFRKLVKEYWSHFQSAELH 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05182 1445 SUPERFAMILY ABC transporter transmembrane region 267 572 IPR036640 GO:0005524|GO:0016020
Vivi2g05182 1445 FunFam ABC transporter C family member 5 848 1180 - -
Vivi2g05182 1445 Pfam ABC transporter transmembrane region 883 1134 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05182 1445 Pfam ABC transporter transmembrane region 279 537 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05182 1445 SMART AAA_5 621 794 IPR003593 GO:0016887
Vivi2g05182 1445 SMART AAA_5 1225 1417 IPR003593 GO:0016887
Vivi2g05182 1445 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 205 1433 - -
Vivi2g05182 1445 Pfam ABC transporter 612 746 IPR003439 GO:0005524
Vivi2g05182 1445 Gene3D - 1182 1434 IPR027417 -
Vivi2g05182 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 893 1162 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05182 1445 CDD ABC_6TM_ABCC_D2 881 1174 IPR044726 GO:0140359
Vivi2g05182 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1188 1432 IPR027417 -
Vivi2g05182 1445 FunFam ABC transporter C family member 3 1182 1434 - -
Vivi2g05182 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 817 IPR027417 -
Vivi2g05182 1445 ProSitePatterns ABC transporters family signature. 719 733 IPR017871 GO:0005524|GO:0016887
Vivi2g05182 1445 CDD ABCC_MRP_domain2 1197 1417 - -
Vivi2g05182 1445 Gene3D - 572 842 IPR027417 -
Vivi2g05182 1445 CDD ABC_6TM_ABCC_D1 280 567 IPR044746 GO:0140359
Vivi2g05182 1445 Gene3D ABC transporter type 1, transmembrane domain 253 571 IPR036640 GO:0005524|GO:0016020
Vivi2g05182 1445 Gene3D ABC transporter type 1, transmembrane domain 847 1181 IPR036640 GO:0005524|GO:0016020
Vivi2g05182 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1199 1433 IPR003439 GO:0005524
Vivi2g05182 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 596 817 IPR003439 GO:0005524
Vivi2g05182 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 279 559 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05182 1445 FunFam ABC transporter C family member 5 584 826 - -
Vivi2g05182 1445 CDD ABCC_MRP_domain1 594 793 - -
Vivi2g05182 1445 FunFam ABC transporter C family member 10 262 575 - -
Vivi2g05182 1445 Pfam ABC transporter 1216 1364 IPR003439 GO:0005524
Vivi2g05182 1445 SUPERFAMILY ABC transporter transmembrane region 879 1182 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05182 Vivi-Chr2 174506794 174512950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05182 588 809 Calmodulin-binding Proteins AT2G36910 32.500 9.99e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05182 K05666 - gmx:100787314 2147.47