Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05178 ATGAATGACTTTTGGAGCATGATTTGTGGGCACTGTGGTGATGGTGATAATGGAGGGAAATCCTTCTGTTATGATTTAAAACTTTTGAAAGATCCTTCCTCATGCATCAACCATGTCTTGGTAACTTGCTTTGATGTGTTCCTGCTAATCATGTTGTCATTCATCATAATCTTGAAGTCTTACTCAAGATCCTTTCCGAGTACAACAAGATATTCAAACTCACAGCTAGTTTCTGCCATAGCCAATGGCTCTCTTGGTTTGTTGCATTTATCCTTGGGAATTTGGGTTTTAGAGGAAAAGATAAGAAAAACCCACAATGCCTTTCCAATTATCGGGTGGTTCCGAGAACTCTTTCATGGACTCACATGGTTATCAGTAAGTTTAACTGTAAGCCTACAGATAAAACAGCTCTCAACAGCATGGTTGTGGATGTTTTCTGTTCTCACATTCTTTGTATCTGGTATATTGTGTGCGCTATTTGTGTCTGATTCAATTGACAGCGGCAAACTGTCTCGTGAGGCAGCTTTATATGTTCTATCTTTTCCAGGAGCAGCATTACTGTTGTTATGCACATACACATACAATGCTGACAGGGAAATAGGTGAAAGTCTTTATGCTCCTCTTAATGACCAACTCAATGAAGATGAGCCTGTAAGCACTGTAACCCCATTTTCAGAAGCTGGACTCTTTAGCAATATATCATTTTGGTGGTTGAATCCTTTGATGAAAAGGGGTAGAGAGAAAACACTTCTAGACGAGGATATCCCAAAGTTAAGAGAGTTGGACCGTTCAGAAAGTTGTTATTCATCGTTTGTAGAAAGGTTAAACGAACAAAAACAACATGAACCGTCAACAAATTCGTCGGTTTTATGGACAATAATTTTGTGCCACAAGAGCGAGATTTGGATCACAGGATTCTTGGCTTTTCTCAAGGTACTCACTCTATCTTCTGGTCCTCTGCTTCTGAATGAATTTATATTGGTTGCAGAAGGTAATGAAAGTTTCAAATATGAAGGCTATGTATTAGTCATATCAATCTTCTTCATAAAGATCATAGAATCCTTATCACAAAGACAATGGTATTTCCGCAGTAGACTAGTTGGAGTGAAAGTTAGATCACTACTTACTGCAGCCGTTTATAAGAAAATTTTAAGGCTATCCAATTCTGCTAGACAGATCCATTCCGGAGGTGAGATAATGAATTATATGACAGTGGATGCTTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAGAGTTGGACAACAATCCTCCAGTTAGGTATTGGTTTAGTAATTCTTTTCCGCACAATTGGACTAGCAACACTAGCATCACTGGCAGTCATATTTCTCACTGTGATTTGCAACGGTCCAATAGCGAAGTTACAACACAAGTTTCAAAACAAACTTATGGTAGTACAAGATAAGAGATTAAAGGCTAGTTCTGAGGCTATGGTGAATATGAAAGTCCTGAAGCTATATGCATGGGAAACACATTTTAAAAATGTTGTAGATTCCTTAAGAAATGCGGAACTCAAATTGTTATCTGCAGTTCAATTAAGAAGAGCATACAATATATTTTTCCTTTGGACCTCATTAATATTGGCATCTGCTGCTACTTTTTTCGCATGTTACTTCTTGAATGTTCCTTTGAATGCAAGTAAAGTTTTCACTTTTGTGGCAACTTTGCGTCTTGTTCAAGAACCAATTCAAACTATCTCGGATATTATTGCAGCGATCATTCAGGCAAAAGTTGCATTTACTCGGATCATTAATTTCCTTGATGCACCAGAACTGCAGAGTGAAAACTTCAAGAAAAGGTGCTTCAATGAGAACCTCAGAAACACAATTTCAATAAAATGTGCAGATTTTTCATGGGAAGATGATGCGTTCAAGCCAACACTAAGGGACATAAATTTGGAGGTTATACATGGCCAAAAGGTGGCTATTTGTGGAGAAGTTGGTTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTTCTAAAACAAAAGGAACAATTGATGTTCATGGGAGGTTTGCATATGTTTCTCAAGCAGCATGGATACAAACAGGCACGGTACAGGAAAATATTTTATTTGGATCTGAGTTGGATGATCAAAGGTACCAAGAAACACTTCAAAAGTCTTCGTTGGCAAAAGACCTTGAGTTGTTGCCCTATGGGGACCTCACTGAAATAGGCGAGAGAGGAGTAAATTTAAGTGGAGGACAAAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAAAATGCTGATATATATCTATTGGATGATCCGTTTAGCGCTGTTGATGCACATACTGCCAAAAATTTGTTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACAGTCTTACTCGTGACACATCAAGTCGATTTCCTCCCGGCATTTGATTCTATTTTGTTGATGTCTAATGGGGCAATCCAACAAGCTGGTCCATATCACCAATTGTTGATCTCAAGCAAAGAATTCAATGACCTTGTCAATGCTCACAAAGAGACTGCTGGTTCTGACCAGCACGAGAGTGTTACTTTTTCCCAAAGACATTCAACTTCCATAAAGAGTGTGCAAGCTTCCCTGTTAAAGCAGTATAAAGCACCAAATGGAAATCAATTAATTCAGCAAGAAGAGAGAGGGGAAGGAGACATGGGATTGAAGCCTTACTTACAATATCTAAATCGGATGAAAGGCTATATAGTATTCTCTATGGCTTCCCTTTGCTTCCTTATTTTTATGGTTTGTCAGATATTGCAAAACTCATGGATGGCTGCCAAAGTTGAAAATCCTCTTGTCAGCACATTGCAATTGGTTCTAGTTTATTTCCTAATTGGTGCTTTTTCATCAGTTTTCATGTTAATCAGATGTCAACTTGTGGTTACTTTGGGTCTTCAATCATCAAAAGATTTATTTTCACAATTGATGAACTCCCTCTTCCGCGCACCCATGTCATTTTATGACTCTACACCGTTGGGAAGGGTACTTAGCAGGGTTACATCTGATATGAGTATTGTGGATCTTGACATTCCATTTAGCCTCAGTTTTGCTGTTATTGGCACTATATCTCTTTATTCTAATCTTATAGTTTTGGCGGTTGTCACATGGCAAGTCTTGATAGTGGCAATACCAATGGTTTATCTTGCTATTCACCTCCAGAGATACTACTTTGCCTCAGCAAAAGAAGTAATGCGGTTGAATGGCACAACAAAATCCTCTTTAGCAAATCATGTAGCCGAAACTGTTGCTGGAGCTGTAACAATAAGGGCTTTTGAAGAGGAAGATCGTTCGTTTGAGAAGAACCTTGATCTAATTGATAATAATGCTAGTGCTTTTTTTCATAGTTTTTCCTCAAACGAGTGGTTGATCCAACGGTTAGAAACAATCAGTGCGGTTGTTCTTGCCGCTACAACACTTTGCCTGGTTATGCTGCCCCCTGGAACTTTCCCCTCAGGAATTATTGGAATGGCTCTATCTTATGGCCTATCACTAAACAGTGCTTTAGTATTTGCAATTCAAAGTCAATGCATTCTTGCTAATCACATAATATCAGTAGAGAGGCTAAACCAATATATGCATATACAAAGTGAGGCCGAAGAAATAGTAAAAGGAAATCGCCCTCCTTTGAATTGGCCAGCTTCGGGCACAATAGAAATAAATGACTTGAAGATACGATACAGACATGGCGGACCACTTGTTCTTCATGGGATCACATGCACATTTAAAGCCGGTCACAAGATTGGTGTTGTTGGCAGAACAGGCAGTGGGAAGTCCACTCTTATTGGGGCGTTATTTCGTCTTGTGGAACCAGCGGAAGGAAAAATTGTAGTTGATGGCATAGACATCTCATCTATAGGTCTTCATGATTTGAGGTCACGTCTTGGGATTATACCTCAGGATCCTACCCTTTTTAATGGGACAGTAAGATTTAACTTGGACCCTTTATCTCAACACACGGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAATTGCGAGAAGTCATCCAAGGGAAAAAAGAAGGCTTAAACTCTTCAGTTGTTGAAGATGGATCAAATTGGAGTATGGGACAAAGGCAGTTATTCTGTTTGGGGCGTGCACTTTTGAGGAGAAGTAGGATATTAGTATTGGACGAAGCAACTGCATCAATTGATAATTCTACTGACCTGATTGTGCAGAAAACCATTAGGGCTGAGTTTGCAGATTGTACGGTGATCACAGTAGCACATAGGATACCAACTGTGATGGATTGCACTATGGTTCTTGCTATAAATGATGGAAAACTGGCGGAGTATGATGAGCCAATGAGCTTGATGAAGAGAGAAGAATCGATGTTCAGGCAGCTTGTTAAGGAATACTGGTCTCATATTCAGTCTGCAGAATTGCGTTGA 4416 0.3922 MNDFWSMICGHCGDGDNGGKSFCYDLKLLKDPSSCINHVLVTCFDVFLLIMLSFIIILKSYSRSFPSTTRYSNSQLVSAIANGSLGLLHLSLGIWVLEEKIRKTHNAFPIIGWFRELFHGLTWLSVSLTVSLQIKQLSTAWLWMFSVLTFFVSGILCALFVSDSIDSGKLSREAALYVLSFPGAALLLLCTYTYNADREIGESLYAPLNDQLNEDEPVSTVTPFSEAGLFSNISFWWLNPLMKRGREKTLLDEDIPKLRELDRSESCYSSFVERLNEQKQHEPSTNSSVLWTIILCHKSEIWITGFLAFLKVLTLSSGPLLLNEFILVAEGNESFKYEGYVLVISIFFIKIIESLSQRQWYFRSRLVGVKVRSLLTAAVYKKILRLSNSARQIHSGGEIMNYMTVDAYRIGEFPFWFHQSWTTILQLGIGLVILFRTIGLATLASLAVIFLTVICNGPIAKLQHKFQNKLMVVQDKRLKASSEAMVNMKVLKLYAWETHFKNVVDSLRNAELKLLSAVQLRRAYNIFFLWTSLILASAATFFACYFLNVPLNASKVFTFVATLRLVQEPIQTISDIIAAIIQAKVAFTRIINFLDAPELQSENFKKRCFNENLRNTISIKCADFSWEDDAFKPTLRDINLEVIHGQKVAICGEVGSGKSTLLATILGEVSKTKGTIDVHGRFAYVSQAAWIQTGTVQENILFGSELDDQRYQETLQKSSLAKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSNGAIQQAGPYHQLLISSKEFNDLVNAHKETAGSDQHESVTFSQRHSTSIKSVQASLLKQYKAPNGNQLIQQEERGEGDMGLKPYLQYLNRMKGYIVFSMASLCFLIFMVCQILQNSWMAAKVENPLVSTLQLVLVYFLIGAFSSVFMLIRCQLVVTLGLQSSKDLFSQLMNSLFRAPMSFYDSTPLGRVLSRVTSDMSIVDLDIPFSLSFAVIGTISLYSNLIVLAVVTWQVLIVAIPMVYLAIHLQRYYFASAKEVMRLNGTTKSSLANHVAETVAGAVTIRAFEEEDRSFEKNLDLIDNNASAFFHSFSSNEWLIQRLETISAVVLAATTLCLVMLPPGTFPSGIIGMALSYGLSLNSALVFAIQSQCILANHIISVERLNQYMHIQSEAEEIVKGNRPPLNWPASGTIEINDLKIRYRHGGPLVLHGITCTFKAGHKIGVVGRTGSGKSTLIGALFRLVEPAEGKIVVDGIDISSIGLHDLRSRLGIIPQDPTLFNGTVRFNLDPLSQHTDQEIWEVLGKCQLREVIQGKKEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLIVQKTIRAEFADCTVITVAHRIPTVMDCTMVLAINDGKLAEYDEPMSLMKREESMFRQLVKEYWSHIQSAELR 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05178 1471 Pfam ABC transporter 1242 1390 IPR003439 GO:0005524
Vivi2g05178 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 914 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05178 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1225 1459 IPR003439 GO:0005524
Vivi2g05178 1471 Gene3D ABC transporter type 1, transmembrane domain 873 1207 IPR036640 GO:0005524|GO:0016020
Vivi2g05178 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 840 IPR027417 -
Vivi2g05178 1471 FunFam ABC transporter C family member 5 874 1206 - -
Vivi2g05178 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1458 IPR027417 -
Vivi2g05178 1471 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 1459 - -
Vivi2g05178 1471 SUPERFAMILY ABC transporter transmembrane region 898 1207 IPR036640 GO:0005524|GO:0016020
Vivi2g05178 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 302 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05178 1471 Pfam ABC transporter transmembrane region 302 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05178 1471 Pfam ABC transporter transmembrane region 938 1149 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g05178 1471 CDD ABCC_MRP_domain2 1223 1443 - -
Vivi2g05178 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 840 IPR003439 GO:0005524
Vivi2g05178 1471 Gene3D - 593 866 IPR027417 -
Vivi2g05178 1471 SMART AAA_5 644 817 IPR003593 GO:0016887
Vivi2g05178 1471 SMART AAA_5 1251 1435 IPR003593 GO:0016887
Vivi2g05178 1471 FunFam ABC transporter C family member 5 606 848 - -
Vivi2g05178 1471 Pfam ABC transporter 635 769 IPR003439 GO:0005524
Vivi2g05178 1471 Gene3D - 1209 1461 IPR027417 -
Vivi2g05178 1471 SUPERFAMILY ABC transporter transmembrane region 290 597 IPR036640 GO:0005524|GO:0016020
Vivi2g05178 1471 FunFam ABC transporter C family member 3 1208 1460 - -
Vivi2g05178 1471 CDD ABCC_MRP_domain1 617 816 - -
Vivi2g05178 1471 FunFam ABC transporter C family member 10 285 598 - -
Vivi2g05178 1471 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Vivi2g05178 1471 CDD ABC_6TM_ABCC_D1 303 590 IPR044746 GO:0140359
Vivi2g05178 1471 Gene3D ABC transporter type 1, transmembrane domain 289 592 IPR036640 GO:0005524|GO:0016020
Vivi2g05178 1471 CDD ABC_6TM_ABCC_D2 916 1200 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05178 Vivi-Chr2 174393321 174400604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05178 430 873 Calmodulin-binding Proteins AT2G36910 24.520 1.39e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05178 K05666 - gmx:100787314 2164.81