Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05146 ATGGAACAGAAACATGTTTTTTTGTCTGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTGAGTTCTGGACAAGCTGTTCAGAAATGGGTTGGTGGGAATCGTGATTTTGGGGAGGTTTCTGGGGAGCAAATTGTTGAAGAACTTAAGAGGCTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGCGAAAGAACTCGAGTTTTGTTGACGAGCGCTGCTTATGTTCATTTAAAACATCTTAACTTTTCCAAGCATACAAGGAACCTCTCACCAGCAAGCAGGGTTATCTTACTCTCTGGTCCAGCAGAACTTTATCAGCAAATGCTTGCAAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGCTAGATGTAACCGATTTCTCTGTGAAGTTGCAGAGCAGATTTGGATATCCGAGAAAAGAACCATGTTTCAGAAGGTCGATATCCGAAAAGACTTTGGAGCGAATGTCTGGTTTATTTGGTTCCTTTTCAACGCTGCCTTCGACCGGCGAAACTAGAGGAACTCTGCGTCAACAAAGTGGTGAAAGTTCGAATAATCTTCCAAGGCTTCGGAGGAATGCCTCTGCCGCGTCTGATCTAAGTAGCACTTCCTCCCAAAGTGGTTCATTAAATCCAGCTCCTCTACGACGCACGAGTAGCTTGTGTTTTGACGAAAGACTCTTCGTGCAATCACTTTACAAGGTTTTGGTTTCTATCTCGGGAACCGATTCCATAATTTTATACATAAGGGATGTTGAGAAGCTTCTTCTAAAATCACCAAGGTTATACAATTTACTACAAAAGATGATAAAGAAAATATCAGGCTCGGTATTGATACTCGGTTCCCAAATATTAGAAGACGATTGCAAAGAAATCGATGAAAGGATCACTAGCTTATTCCCTTACACCATCGATATCAAAGCACCTGAAGACGAAACTCATCTCGGTAGCTGGAATGGCCAACTCGAAGAGGACATGAAAGTCATTAAGTTTCAAGATACTCGAAACCACATCGCTGAAGTACTCACTGAAAACGACATTGATTGTGACGACTTGAATTCGATATGCCATGCAGACACTATGATACTTAGTAATCATATCGAAGAAATCGTCGTGTCTGCAATTTCTTACCATTTGATGAATACCAAAGAACCAGAATACCGAAATGGAAAGCTAGTTATCTCGTCCAATAGTTTGTCCCAAGGATTGAGTCTCTTCCAAGAAGGCAAGAGTAGTGGGAATTTGAAGACTAATGATTCTAATAAGGAAAATGCCGTTGAAGATATTATTTCTGGTACGAAAGCACCTGAGAACAAAAATGAGATGGAGAAATCGATCCCTGTAACGAAAAAAGAAGGCGAAAATTCTACGCCTGCAAAAGCTGAAGTTCCTGACAATGAGTTCGAGAAGCGAATTAGACCAGAGGTAATCCCTGCAAACGAGATAGGAGTTACATTCGCAGATATCGGCGCATTGGATGAGATAAAAGAGTCACTTCAAGAGCTTGTCATGCTTCCCCTTAGAAGACCGGACCTTTTCAAAGGCGGACTTCTAAAGCCATGTAGAGGTATATTACTTTTCGGGCCACCCGGTACCGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAACGTGTCAATGTCCACCATCACTTCGAAATGGTTCGGAGAAGACGAAAAGAACGTCCGAGCTTTGTTCACGCTAGCAGCTAAGGTTGCTCCGACTATTATATTCGTCGACGAAGTTGATAGCATGCTCGGTCAACGAACTAGAGTTGGAGAACACGAGGCCATGAGGAAGATTAAAAACGAATTCATGACACATTGGGATGGACTATTGTCAGGACCTAATGAACAAATTCTCGTTCTTGCTGCTACCAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGGTTCGAACGCAGGATCATGGTTGGTCTTCCATCTGCCGAGAACCGGGAAATGATCCTAAAAACTCTTCTGTCGAAGGAAAAACACGAAAGTTTAGACTTTAAAGAACTAGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACCGCAGCTTATCGACCCGTTCGGGAGTTAATACAGCAAGAGAGAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGACCGAAAGCGTAAGTTCCGAAGATGCTTCAAATAATAACGATAACGAAGAACGAGAAATTATCTTGAGGCCTTTAAGCATGGAGGACATGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCGGTCATGGGCGAGCTAAAGCAATGGAACGAATTGTACGGAGAAGGCGGTTCAAGGAAGAAACAACAACTCACATACTTCCTCTAG 2433 0.418 MEQKHVFLSALSVGVGLGVGLGLSSGQAVQKWVGGNRDFGEVSGEQIVEELKRLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRVILLSGPAELYQQMLAKALAHYFESKLLLLDVTDFSVKLQSRFGYPRKEPCFRRSISEKTLERMSGLFGSFSTLPSTGETRGTLRQQSGESSNNLPRLRRNASAASDLSSTSSQSGSLNPAPLRRTSSLCFDERLFVQSLYKVLVSISGTDSIILYIRDVEKLLLKSPRLYNLLQKMIKKISGSVLILGSQILEDDCKEIDERITSLFPYTIDIKAPEDETHLGSWNGQLEEDMKVIKFQDTRNHIAEVLTENDIDCDDLNSICHADTMILSNHIEEIVVSAISYHLMNTKEPEYRNGKLVISSNSLSQGLSLFQEGKSSGNLKTNDSNKENAVEDIISGTKAPENKNEMEKSIPVTKKEGENSTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLSKEKHESLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERKKEMEKKKKETESVSSEDASNNNDNEEREIILRPLSMEDMKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05146 810 MobiDBLite consensus disorder prediction 450 478 - -
Vivi2g05146 810 ProSitePatterns AAA-protein family signature. 640 659 IPR003960 GO:0005524|GO:0016887
Vivi2g05146 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 726 IPR027417 -
Vivi2g05146 810 MobiDBLite consensus disorder prediction 423 478 - -
Vivi2g05146 810 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 496 671 - -
Vivi2g05146 810 MobiDBLite consensus disorder prediction 727 754 - -
Vivi2g05146 810 Pfam AAA+ lid domain 690 732 IPR041569 -
Vivi2g05146 810 Gene3D - 669 747 - -
Vivi2g05146 810 Pfam ATPase family associated with various cellular activities (AAA) 537 667 IPR003959 GO:0005524|GO:0016887
Vivi2g05146 810 Coils Coil 719 739 - -
Vivi2g05146 810 MobiDBLite consensus disorder prediction 176 202 - -
Vivi2g05146 810 SMART AAA_5 533 670 IPR003593 GO:0016887
Vivi2g05146 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 370 IPR027417 -
Vivi2g05146 810 Gene3D - 496 668 IPR027417 -
Vivi2g05146 810 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 809 - -
Vivi2g05146 810 MobiDBLite consensus disorder prediction 423 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05146 Vivi-Chr2 173825311 173830897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05146 463 726 Calmodulin-binding Proteins AT3G56690 36.996 1.21e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05146 - - gmx:100817952 1298.11