Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05110 ATGGTTTTAAAATTTTATTTCCTTCTCATTTTAGTTTTGTTTTCACTTTTTCGCTTCACTTTTGAATCAAATATTCTTGAGCCTAATTATAAACAAAGAAACATTTTAGTAAACAAAGAGGATGTGAATGTCATTGAACAACAAAGTCTCGATTTAAAATTGAGGGAAGCTGAGAGTAACAAAATTCATATAACTATTAGCAAAGATTGTAACTCTAATTTCACAACTATTACAGAAGCTCTTAATAGCATTCAACCACAAAACACTAGGAGAGTTATTTTGTTGATTGGACCTGGGATTTATAGGGAGAAAATAATGATCCCACAAACGTTGCCTTTCATAACTTTCTTTGGGGATGCAAGTAAACCGACTTTTTCTTGGAATGATTCAAATTCTACCATTGGAAGTGATGGGCATCCATTGGGGACGTTTAATACTCCCACCGTTGCTGTGAATGCTGACTATTTTATGGCCATCAACGTAACATTTGAGAACACTGCTTCATATTTTGGAAGGAAAGTAGAACAAGCCGTTGCGCTTCGCATTTCCGGTAACAAAGCTGCTTTTTACTATTGTACATTCCGTGGAGTTCAAGACACTCTATATGATCATAAAGGTCTTCACTATTTCAAAAATTGCTTCATAGAAGGCTCTATTGATTTCATCTTTGGCTTTGGAAGATCCCTATATGAGGAATGCACTCTAAATTCAATTGCTAAGAACATAGGCTATATTACTGCTCAAAAACGATCAAGTTCATCATCAGATTCTGGATTTTCTTTTAAAAAATGTAGTGTGAAAGGTAGTGGTCAAGTTTATCTGGGAAGACCATGGGGAGAATATTCCAGAGTCATTTACTCTTATACTGAAATGGAAGAGATTGTTCTTCCCAAAGGATGGGAAGATACTATGAATGGAACACGCCATGCCAATACAGTATATTATGGTGAGTACAAATGCAGTGGACCTGGATCCAATTTTTCTGGAAGAGCTCCATGGGCACGAAATCTCTCTGATGAAGAAGCTCAACCATTTAATGAAATTCATTTTATTGAAGGAGAAACTTGGCTTATAACCCCTAATTAA 1086 0.3554 MVLKFYFLLILVLFSLFRFTFESNILEPNYKQRNILVNKEDVNVIEQQSLDLKLREAESNKIHITISKDCNSNFTTITEALNSIQPQNTRRVILLIGPGIYREKIMIPQTLPFITFFGDASKPTFSWNDSNSTIGSDGHPLGTFNTPTVAVNADYFMAINVTFENTASYFGRKVEQAVALRISGNKAAFYYCTFRGVQDTLYDHKGLHYFKNCFIEGSIDFIFGFGRSLYEECTLNSIAKNIGYITAQKRSSSSSDSGFSFKKCSVKGSGQVYLGRPWGEYSRVIYSYTEMEEIVLPKGWEDTMNGTRHANTVYYGEYKCSGPGSNFSGRAPWARNLSDEEAQPFNEIHFIEGETWLITPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05110 361 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 357 - -
Vivi2g05110 361 SUPERFAMILY Pectin lyase-like 62 357 IPR011050 -
Vivi2g05110 361 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Vivi2g05110 361 FunFam Pectinesterase 59 359 - -
Vivi2g05110 361 Gene3D - 58 360 IPR012334 -
Vivi2g05110 361 Pfam Pectinesterase 64 353 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05110 Vivi-Chr2 173174915 173177225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05110 64 357 Carbohydrate Esterase AT5G47500 43.771 2.62e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05110 K01051 - pvy:116132618 410.609