Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05109 ATGAAATGGAAATGGAGGATCTTGAAAGCTACTAATTCTTTGTGGTATTGGGTTTTAAAGGCGAGATATGTGGATGTAAAAGCGAAGGCGTTGGTTGGAGATTTGAATCATAATATTCGTGGAAAGAGATCCGTGTGGTGGTCGGATATCATGTCTTTGAGAAAACATCTTCCGAAAGATTTTTTTGTTAACAACATTAAGTTTAGTGTGGGGCTTGGCCACTCTATTCCGTTTTGGCATGTCGCTTGGTTAGATGTGGATATTCTTAAACACATCTTTCGAGCTTTATTTTCATCTTCTCTTTTACAGGATGTTGCTATTTCCGGTATGGGCGGTTGGGTTCTTAGCGAATGGAATTGGGGTGATTTTGGAGTGCAATCCGGGGCCAATCCAGAAGTGGCAGAAGCGCTGCCTAATCTCATTCAGCTGCTGCCAGCAGCGTTCTCTCTTGGTGTGGGGCCGGATTCGCCAAAGTGGCTTCCGGCAGAAGATGGATCCTTTTCTGTTTCAACTTGTTTTCGTGAGGTTAGAAACAAAGATGGTATGAGATGGAAAAAGGTTGAAGTGAAGCCAGAAGAGCATGTAAAGGTTCCTAAGTTTCCTGAAACCACAAATTCATCACCAATTGAACTGTATGACAGTCATCTTAGCGACTACGTAACCGGCATTTTCGTTGAAAGAACACCACAAGAGAAACCACTTTGGGAAATTCATGTTATAAATTATCCAACAAAAAATGCTGCTATTTTGTTTTCACTTTTTCGCTTCACTTTTGAATCAAATATTCTTGAGCCTAATTATAAACAAAGAAACATTTTAGTAAACAAAGAGGATGTGAATGTCATTGAACAACAAAGTCTCGATTTAAAATTGAGGGAAGCTGAGAGTAACAAAATTCATATAACTATTAGCAAAGATTGTAACTCTAATTTCACAACTATTACAGAAGCTCTTAATAGCATTCAACCACAAAACACTAGGAGAGTTATTTTGTTGATTGGACCTGGGATTTATAGGGAGAAAATAATGATCCCACAAACGTTGCCTTTCATAACTTTCTTTGGGGATGCAAGTAAACCGACTTTTTCTTGGAATGATTCAAATTCTACCATTGGAAGTGATGGGCATCCATTGGGGACGTTTAATACTCCCACCGTTGCTGTGAATGCTGACTATTTTATGGCCATCAACGTAACATTTGAGAACACTGCTTCATATTTTGGAAGGAAAGTAGAACAAGCCGTTGCGCTTCGCATTTCCGGTAACAAAGCTGCTTTTTACTATTGTACATTCCGTGGAGTTCAAGACACTCTATATGATCATAAAGGTCTTCACTATTTCAAAAATTGCTTCATAGAAGGCTCTATTGATTTCATCTTTGGCTTTGGAAGATCCCTATATGAGGAATGCACTCTAAATTCAATTGCTAAGAACATAGGCTATATTACTGCTCAAAAACGATCAAGTTCATCATTAGATTCTGGATTTTCTTTTAAAAAATGTAGTGTGAAAGGTAGTGGTCAAGTTTATCTGGGAAGACCATGGGGAGAATATTCCAGAGTCATTTACTCTTATACTGAAATGGAAGAGATTGTTCTTCACAAAGGATGGGAAGATACTATGAATGGAACACACCATGCCAATACAGTATACTATGGTGAGTACAAATGCAGTGGACCTGGATCCAATTTTTCTGGAAGAGCTCCATGGGCGCGAAATCTCTCTGATGAAGAAGCTCAACCATTTAATGAAATTCATTTTATTGAAGGAGAAACTTGGCTTATCAACCCTAATTAA 1797 0.384 MKWKWRILKATNSLWYWVLKARYVDVKAKALVGDLNHNIRGKRSVWWSDIMSLRKHLPKDFFVNNIKFSVGLGHSIPFWHVAWLDVDILKHIFRALFSSSLLQDVAISGMGGWVLSEWNWGDFGVQSGANPEVAEALPNLIQLLPAAFSLGVGPDSPKWLPAEDGSFSVSTCFREVRNKDGMRWKKVEVKPEEHVKVPKFPETTNSSPIELYDSHLSDYVTGIFVERTPQEKPLWEIHVINYPTKNAAILFSLFRFTFESNILEPNYKQRNILVNKEDVNVIEQQSLDLKLREAESNKIHITISKDCNSNFTTITEALNSIQPQNTRRVILLIGPGIYREKIMIPQTLPFITFFGDASKPTFSWNDSNSTIGSDGHPLGTFNTPTVAVNADYFMAINVTFENTASYFGRKVEQAVALRISGNKAAFYYCTFRGVQDTLYDHKGLHYFKNCFIEGSIDFIFGFGRSLYEECTLNSIAKNIGYITAQKRSSSSLDSGFSFKKCSVKGSGQVYLGRPWGEYSRVIYSYTEMEEIVLHKGWEDTMNGTHHANTVYYGEYKCSGPGSNFSGRAPWARNLSDEEAQPFNEIHFIEGETWLINPN 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05109 598 FunFam Pectinesterase 296 596 - -
Vivi2g05109 598 ProSitePatterns Pectinesterase signature 2. 452 461 IPR033131 -
Vivi2g05109 598 SUPERFAMILY Pectin lyase-like 299 594 IPR011050 -
Vivi2g05109 598 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 291 594 - -
Vivi2g05109 598 Pfam Pectinesterase 301 590 IPR000070 GO:0030599|GO:0042545
Vivi2g05109 598 Gene3D - 295 597 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05109 Vivi-Chr2 173137010 173157127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05109 301 594 Carbohydrate Esterase AT5G47500 44.108 6.84e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05109 K01051 - thj:104801310 404.831