Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05076 ATGGAGAAACAAGATCCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGAGTTAGGCTGAGACCATGGGGAAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGAGTATGGCTTGGCACATTTGAAACAGCTGAAGCTGCAGCTACTGCTTATGATGAAGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCAACTCATTTCTAATTCCCCGCATCCAGATCCATCGCCAACGCGTAATAACAATAACGGAAAAAGAGATTCATCTCTATCTTCATCTTCATCTTCATCTTCATCATCGAAGAGTACTCCACCAAAATCTCTTTTTCCGTTATCAACAACGGAAAAAGAGATGTTTCCAAACCTAATGCAATATGCGCAAGTGCTTTGCAGTAAGGACGATGAAGATCTTCGACGTGCTACTATATGTCTTTATAATAATAGTAATAATAATAGTAATCATCACAATAATACTAATGAACGATTTCGTTATTATAATTTGCCGCCATTCTTCTCAACAATGACGCCATCTTCTACTTCTAAGGATGATGTTATGTCTAGGGTCGGAGATCATCGCCCTTTAGATATGAGAAATGATCTTGATGAAAGGAATACCAAAGGGTCATAA 663 0.3771 MEKQDPSQPTNQGNEKKKHYRGVRLRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALKFKGNKAKLNFPQLISNSPHPDPSPTRNNNNGKRDSSLSSSSSSSSSSKSTPPKSLFPLSTTEKEMFPNLMQYAQVLCSKDDEDLRRATICLYNNSNNNSNHHNNTNERFRYYNLPPFFSTMTPSSTSKDDVMSRVGDHRPLDMRNDLDERNTKGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05076 220 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 MobiDBLite consensus disorder prediction 75 122 - -
Vivi2g05076 220 MobiDBLite consensus disorder prediction 188 220 - -
Vivi2g05076 220 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vivi2g05076 220 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Vivi2g05076 220 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Vivi2g05076 220 PANTHER DNA-BINDING DOMAIN 10 115 IPR044808 GO:0003700|GO:0009873
Vivi2g05076 220 MobiDBLite consensus disorder prediction 1 26 - -
Vivi2g05076 220 MobiDBLite consensus disorder prediction 75 123 - -
Vivi2g05076 220 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Vivi2g05076 220 MobiDBLite consensus disorder prediction 196 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05076 Vivi-Chr2 172467287 172469102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05076 1 157 AP2-EREBP Transcription Factor Family AT5G13330 47.134 5.30e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g05076 AP2 8.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05076 - - tpra:123908943 259.61