Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05072 ATGGTTTCAAAAATTTATTTCCTTCTCGTTTTACTGTTGCTTTCATCTTTTCACTTCACTTTTGAATCAAATATTCTCGAGTCTAATTTAAAAAAAAGAAACATTTTAGTAAACAAAGGAAATTTGAATGTCTTTGAACAACAAGGTCTTGATTTAAAGTTAAGGGAAGCGGAGAGTAAAAAAATTCAAATAACTATTAACAAAGATGGTAACTCTAATTTCACAACCATTGCCGAAGCTCTTAGTAGCATCCAACCACAAAATACTAGGAGAGTTATTTTGTATATTGGGCCTGGTGTTTATAGAGAGAAAATTATAATTCCCGGAACATTGCCTTTCATAACTTTTGTTGGGGACGCAAAAGATCTAACGACTATCACCTGGAACGATTCAAATTCTACCATTGGAAGTGATGGCCGTCCGTTAGGGACGTTCAATACTGCAACTGTTGCTGTGAATGCCGACTATTTTATAGCAATTAACATGGCATTTGAGAACACTGCTTCATATTCTGCATCCAAGATAGAACAGGCGGTTGCACTTCGTATTTCTGGTAACAAAGCCGCTTTCTATAATTGCTCATTCTTTGGAGTTCAAGACACTCTATATGATCATAAGGGTCTTCACTATTTCAAAAATTGTTTTATACAAGGCTCTGTTGATTTCATCTTCGGTTTTGGAAGGTCCTTATACGAGGAATGCACTCTAAACTCAATAGCCAAAAACATAGGCTACATCACAGCACAAAAGCGATCAAGTTCATCATTGGATACTGGTTTTTCTTTTATTAAAGGTTTTGTAAAAGGTAGTGGACAAGTTTATCTTGGAAGACCATGGGGAGAATATTCAAGAGTCATTTATTCTTACACCAATATGAAAGAGATTGTTCTTCCTAAAGGATGGGAAGATACTATGAATGGAACACACTACTCCAATACAGTATATTATGGAGAGTACAAGTGTAGCGGACCTGGATCAAACTTTTTAGGAAGAGCTCCATGGGCACGAAATTTAACTGATGAAGAGGTTCAACCATTTATTGGGATTCATTTTGTTGAAGGAGAAACTTGGCTCATCAATCCTAATTAA 1089 0.3572 MVSKIYFLLVLLLLSSFHFTFESNILESNLKKRNILVNKGNLNVFEQQGLDLKLREAESKKIQITINKDGNSNFTTIAEALSSIQPQNTRRVILYIGPGVYREKIIIPGTLPFITFVGDAKDLTTITWNDSNSTIGSDGRPLGTFNTATVAVNADYFIAINMAFENTASYSASKIEQAVALRISGNKAAFYNCSFFGVQDTLYDHKGLHYFKNCFIQGSVDFIFGFGRSLYEECTLNSIAKNIGYITAQKRSSSSLDTGFSFIKGFVKGSGQVYLGRPWGEYSRVIYSYTNMKEIVLPKGWEDTMNGTHYSNTVYYGEYKCSGPGSNFLGRAPWARNLTDEEVQPFIGIHFVEGETWLINPN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05072 362 Gene3D - 58 361 IPR012334 -
Vivi2g05072 362 Pfam Pectinesterase 64 354 IPR000070 GO:0030599|GO:0042545
Vivi2g05072 362 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Vivi2g05072 362 SUPERFAMILY Pectin lyase-like 62 358 IPR011050 -
Vivi2g05072 362 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 358 - -
Vivi2g05072 362 FunFam Pectinesterase 59 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05072 Vivi-Chr2 172310650 172312860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05072 7 358 Carbohydrate Esterase AT5G47500 41.292 1.85e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05072 K01051 - pvy:116132618 424.476