Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05061 ATGGAAGAATCTCAAAAATGTTGGCGAAAACAAGTAGACGAAAATCTCAAAAGACTACACTCTCTCTTGTTCGGCGTAGAACGCGCCATCGAAAACCACGATTTCTCCTCCGCATACATCCTCTCTCTTCGTCTCATCGGATTCCTTGATTCTCATTCTCAATCGGAAACCGATCAAGCTTTCATTCAACACATTCGTCGTCAAGCCTTAACCTACCTCCACACAGCCAGAAAAGCGATAACTCCAGTAACTAATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCATCAGGACCTGTTTTTGGCACAACAGGAGATATTGACATTGACAAGATACGGAATTCAAAATATTTTCAAGCTCTCCTCAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTTGATCAACTGAGGAAGCAAAACAAAACAGAAAAGGAAGCCTCAAAGGTAGGGATACAAGCAAAGTTAACATCTTTGTATGGGAAAAGCAGCTTGAGTACTAGTAATGGTCCCAAAAGTGTTTTCAACTTGAAAAATAACAGTTCCGAGGACTGCATGATTATTAGAAGGCCTCAATCACATCCCATCAATACAAAGGGTCCCGACTTCTCTTCTGTTATTGATGTTGAAGGAGAGGAACGGGCTTATGGAAACACTTTTTCAACAAAACGTGCACACACTGAAAATAATAGCCCAAGAGTTGGCTATGTCAAGTCACCTTCAAGCAAGGAAGAAGTTAATCCTGATGTTGCTGGCAATGGGTTCGTTACTGCCAGAACAAAGTTGGAAATGGATGTAAAGCAAAAGCGAGGTGCAATCGGCTCTCCCAGTGCATCTGTCTCACCCCAATGTGACAACAATTCTGCCAACAGGCTATATGGTGGGAGATCATATGGTGTTCCACGACGTGGCATTCGTGGTAATTTTGTCCCCCCTATTAAGTCCAATGGGAACAATACTGGAAATACAACTTCCCGAAATGCTGGAAAGGGTGATGATTCTTTAGACGAATCAACAAAAAAATGTTTGGAATTCTTGTGTGGTCCTGATGGTGAACTTCCTGAGAAATTAAGGAATTTAGAACCTCGCCTCATTGAGCATGTTAGTAACGAGATTATGGATAAAGATCCCAATGTCCACTGGGATGACATTGCTGGATTAGACCATGCCAAACGTTGTATCAATGAGATGGTCGTATTTCCTCTGCAACGTCCTGACTTATTTACGGGCTGCCGTTCTCCTGGGAGAGGCCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATTGGAAAAGCCATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACCAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCACTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCTGTAATTTTTGTTGATGAAATAGATTCTCTCTTGTCTCAGCGTAAGTCAGATGGTGAGCATGAATCAAGTAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGCTTTGAAGGTGGTAACGAGCAAATTCTACTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACTAAAAGACTATATATTCCTCTACCATCCGCAGACGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGATGGATTATTCAATCTATCGGAAGAGGAAATGAATATTATATGTAACTCAACCGATGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGACGCTTCAATTGGTCCTTTGAGAGAGGCAATAAATCAAGGTATGGAAATTGCAAAGTTGAAAAAGGAGGATATGAGGCCAATAACTCTTCAGGACTTCAAGAATTCCCTGAATGAGGTGAGGGCTTCTGTTTCACCAAATGAACTTGGAAATTACGAGGAATGGAACAAGAAATTTGGAAGCTTATCACTTTAG 1977 0.4203 MEESQKCWRKQVDENLKRLHSLLFGVERAIENHDFSSAYILSLRLIGFLDSHSQSETDQAFIQHIRRQALTYLHTARKAITPVTNRQAFEQVKRSSGPVFGTTGDIDIDKIRNSKYFQALLKPSKEKDCNQLVDQLRKQNKTEKEASKVGIQAKLTSLYGKSSLSTSNGPKSVFNLKNNSSEDCMIIRRPQSHPINTKGPDFSSVIDVEGEERAYGNTFSTKRAHTENNSPRVGYVKSPSSKEEVNPDVAGNGFVTARTKLEMDVKQKRGAIGSPSASVSPQCDNNSANRLYGGRSYGVPRRGIRGNFVPPIKSNGNNTGNTTSRNAGKGDDSLDESTKKCLEFLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVHWDDIAGLDHAKRCINEMVVFPLQRPDLFTGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFEGGNEQILLIGATNRPQELDEAARRRLTKRLYIPLPSADARAWIARSLLEKDGLFNLSEEEMNIICNSTDGYSGSDMKNLVKDASIGPLREAINQGMEIAKLKKEDMRPITLQDFKNSLNEVRASVSPNELGNYEEWNKKFGSLSL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05061 658 Gene3D - 548 634 - -
Vivi2g05061 658 SMART AAA_5 413 549 IPR003593 GO:0016887
Vivi2g05061 658 FunFam Fidgetin-like 1 376 558 - -
Vivi2g05061 658 Gene3D - 376 650 IPR027417 -
Vivi2g05061 658 MobiDBLite consensus disorder prediction 270 296 - -
Vivi2g05061 658 PANTHER AAA DOMAIN-CONTAINING 198 655 - -
Vivi2g05061 658 MobiDBLite consensus disorder prediction 222 236 - -
Vivi2g05061 658 ProSitePatterns AAA-protein family signature. 519 538 IPR003960 GO:0005524|GO:0016887
Vivi2g05061 658 MobiDBLite consensus disorder prediction 308 334 - -
Vivi2g05061 658 MobiDBLite consensus disorder prediction 273 292 - -
Vivi2g05061 658 Pfam Vps4 C terminal oligomerisation domain 619 654 IPR015415 -
Vivi2g05061 658 Pfam ATPase family associated with various cellular activities (AAA) 417 547 IPR003959 GO:0005524|GO:0016887
Vivi2g05061 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 653 IPR027417 -
Vivi2g05061 658 MobiDBLite consensus disorder prediction 311 328 - -
Vivi2g05061 658 FunFam Fidgetin like 1 548 634 - -
Vivi2g05061 658 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05061 Vivi-Chr2 171848349 171856104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05061 354 656 Calmodulin-binding Proteins AT3G56690 32.143 7.31e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05061 K22766 - gmx:100776024 1064.29