LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05058	ATGGGAGCACCGAAGAAGAGTGCCGCTAGGGTTTCAGAGGATCACGACGACCTCGTTCGCGTTCCGTTACAAGCGATTCTCATAGCCGATAGTTTTACTACAAAGTTCAGACCTATCACTCTTGAACGCCCCAAAGTGCTTTTGCCACTGGTGAATGTTCCGATGATAAATTACACATTGACATGGCTTGAATCGGCTGGTGTAGAAGAGGTTTTTGTTTTCTGTTGTGCTCATGCGAAACAGGTGATTAACTATTTGGAGAAATCTGAGTGGTTTTCTCATCCTAATTTCACTGTAACAACTATAGAGTCGCAGAATTCTGTTAGTGCTGGAGACGCAATGCGTGTTATCTACGAGCGCAATGTGATACAAGGAGATTTTGTTCTTATCAGTGGAGATACTGTAAGCAACATGTCACTTACTCAAGCACTTTTAGAACATAAAGAAAGGAAGAAGAAGGATAGTAATGCTGTAATGACCATGGTTATCAAACGGTCTAAAACCCATCCAGCAATCCATCAGTCTCGACTTGGTACCGATGAAATTTTCATGGCCATTGATCCGAATACGAAGCAACTTTTGTCTTATGAGGATAAGGCAGACTATTCAAAAGGCACTTTACATCTTGAAAATTCATTGCTTGCTGATAATCCTTCCCTCTCTTTGCACCATGACAAGCAGGATTGTTACATCGACATTTGCTCACCAGAAGTCCTTACCCTATTTACAGACAATTTTGACTACCAACATCTTCGGCGACATTTTGTCAAGGGACTGCTTGTTGATGATATAATGGGATATAAAATTTTTGTGCATGAAATCCGCTCAGACTATGCTGCAAGGATTGATAATTTCCGAAGCTATGCCACTGTCAGCAAAGATATAATTCATAGATGGACATATCCACTGGTCCCTGATGTTATGAATTTTGGCAACACAACTACTAAGCTTGAAAGACAGGGAATATATCGTGCCTCAGAAATTTCACAATCACAGTCAGCTGTTGTCGGCCCGTTCTCTGTTATTGGATCTGGCACCAAAATTGGCAACAACACTAACATTTTAAATTCCGTTGTGGGAGGAGGATGTAAAATCGGATCAAATGTACACATAGAGGGGTGCTATATATGGGACAATGTCACCATAGAAGATGGTTGCGAACTTAGGCATGCCATTGTATGTGAGGGGGTGATCATGAAATCAGGATCTGTTCTGGAACCTGGTGTAGTATTGTCTTTTAAGGTTATAGTTGGGCAGGAGTTTGTTGTTCCTCCTTATTCACAAGTATCGCTACTACAGCAGCCAATTGAGGAAGATAGCGATGAAGAGCTCGAATATGCTGATAGTACTAGTGTCATCACCAGCACAGTGGATAAGTCAGAGGGAGAGTTTGCTTCAGAATTATCGGATGCACATTATAACCCTACTTCAGAGCTAGGTTTTGGTGGGGTTGGTTATGTTTGGCCAAAATGTGAAGGAGGGCACGAGGAAGAGTGGAGGCATTCAATGGCGCCTATTACTGAAGATAAAATTTTGGAGGCAGTGAAAGCTATGGAAAATGAACTGGAGTTAATTCATGATGGCAATACTCTTCCACCTTCTGGGGAGCTGATACCTAATTCTAATGATTCAGACGATGATAATGACGATTTAAGAGATGACTTTGATAAGGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAACATACAAGACGTCCATTTGACTTTAGAAATCAACTCTTTGAAGTTGTCATACAATAAGATAACTGCTGATTGTGCTGGAGCTTTATTTTATGCAATGATGAAGCATGCTGTAGACATGCCTCATAGTTCAGCTGATAGCTTGATTCAGAATGTAAATGCCATAATTACAAAATGGAAAAAGGTTCTTAAATCCTATCTGAATGATATGGACGAACAGATCGAAGTGATTCTAAAGTTTGAAGAAATGTGTTTGGAATCTGCCAAGGAGTTTGCTCCATTGTTCACAAAGATTTTGCACTACCTATATAATGAAGATATTGTAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAAAAGGACGCAGATGAGTCGGATAAAGTATTCGTAAACCAAGCCCAAAAATTAATTCAATGGCTAAAAGAGGCTCCTGAAGAAGACGATGACGAGGAAGAATAG	2169	0.4043	MGAPKKSAARVSEDHDDLVRVPLQAILIADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHAKQVINYLEKSEWFSHPNFTVTTIESQNSVSAGDAMRVIYERNVIQGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKTHPAIHQSRLGTDEIFMAIDPNTKQLLSYEDKADYSKGTLHLENSLLADNPSLSLHHDKQDCYIDICSPEVLTLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIRSDYAARIDNFRSYATVSKDIIHRWTYPLVPDVMNFGNTTTKLERQGIYRASEISQSQSAVVGPFSVIGSGTKIGNNTNILNSVVGGGCKIGSNVHIEGCYIWDNVTIEDGCELRHAIVCEGVIMKSGSVLEPGVVLSFKVIVGQEFVVPPYSQVSLLQQPIEEDSDEELEYADSTSVITSTVDKSEGEFASELSDAHYNPTSELGFGGVGYVWPKCEGGHEEEWRHSMAPITEDKILEAVKAMENELELIHDGNTLPPSGELIPNSNDSDDDNDDLRDDFDKEVEATFLRAVHENIQDVHLTLEINSLKLSYNKITADCAGALFYAMMKHAVDMPHSSADSLIQNVNAIITKWKKVLKSYLNDMDEQIEVILKFEEMCLESAKEFAPLFTKILHYLYNEDIVEEDAILSWEDEKKDADESDKVFVNQAQKLIQWLKEAPEEDDDEEE	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05058	722	Pfam	Nucleotidyl transferase	27	164	IPR005835	GO:0009058
	Vivi2g05058	722	Gene3D	Hexapeptide repeat proteins	319	450	-	-
	Vivi2g05058	722	FunFam	Translation initiation factor eIF-2B subunit epsilon	12	303	-	-
	Vivi2g05058	722	FunFam	Trimeric LpxA-like enzyme	316	449	-	-
	Vivi2g05058	722	CDD	eIF-2B_epsilon_N	23	239	IPR035543	-
	Vivi2g05058	722	Pfam	eIF4-gamma/eIF5/eIF2-epsilon	641	720	IPR003307	GO:0005515
	Vivi2g05058	722	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	20	369	IPR029044	-
	Vivi2g05058	722	SUPERFAMILY	Trimeric LpxA-like enzymes	267	428	IPR011004	-
	Vivi2g05058	722	PANTHER	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	8	721	-	-
	Vivi2g05058	722	FunFam	Translation initiation factor eIF-2B epsilon subunit	544	721	-	-
	Vivi2g05058	722	SUPERFAMILY	ARM repeat	554	713	IPR016024	-
	Vivi2g05058	722	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	12	303	IPR029044	-
	Vivi2g05058	722	CDD	W2_eIF2B_epsilon	557	713	IPR044123	GO:0005085\|GO:0031369
	Vivi2g05058	722	Gene3D	-	543	721	-	-
	Vivi2g05058	722	MobiDBLite	consensus disorder prediction	526	552	-	-
	Vivi2g05058	722	CDD	LbH_eIF2B_epsilon	341	419	-	-
	Vivi2g05058	722	ProSiteProfiles	W2 domain profile.	549	720	IPR003307	GO:0005515
	Vivi2g05058	722	SMART	542_3	629	716	IPR003307	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g05058	Vivi-Chr2	171797984	171807777	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05058	1	713	Eukaryotic Initiation Factors Gene Family	AT2G34970	63.071	0.0	917

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05058	K03240		-	gmx:100784894	1191.41