Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05042 ATGAGAATGTCCTGTAATGGATGCAGAGTTCTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGAATGGATCAAGTGTCCTAAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCACCAACCTCATCAATTCTGGCCAAGAAAATCTTCGTCCAGCAATTTTTCGATCATTGCTATATGAGGCTTGTGGGAGGATCGTGAACCCGGTTTATGGGTCTGTGGGTTTATTATGGTCTGGAAGCTGGCAGCTCTGTCAAGCTGCGGTTGAAGCCGTTTTAAAAGGTGAGCCGATTACGCCGATTGCTTCAGAGGCTGCGAGTGGCCCACCGTTGAAGGCCTATGACATACGCCACGTGTCCAAAGATGGAAACTCGGAGGAGACTCAGCGAGTCAAGACTCGGTCTCGGTTCAGACGAGCCGTGAAGCCGGAGCTCAGCAAAGAAACCGGTTCAGTTGATGAGGCGAACCGATCTGGATCGTCGGGGAGTGAACCGGGTAAAGATAATGAGAGTGGGGTTTCAGTGGAAACTTCGATTATTTTTCATGAAGAACCGGAGTCCGAACCTAAGGTAAGTGACCGAGCCGAGGAAGGTGTGAGTGATGTGGTTGGTTTGGAGCTGAGGCTTGGGATTGAACCGGTTGCACGTGAGGAATATTTGGTTCCCATAAAGAAGAGGAAAATTGAGTTGAAGGATTGTAGTGTTTCTTGCAAAATGGAGCTTGGGCTTCAGTTTGCGGCTTAA 777 0.4762 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKCPKSQANATLFLAKFYGRAGLTNLINSGQENLRPAIFRSLLYEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPITPIASEAASGPPLKAYDIRHVSKDGNSEETQRVKTRSRFRRAVKPELSKETGSVDEANRSGSSGSEPGKDNESGVSVETSIIFHEEPESEPKVSDRAEEGVSDVVGLELRLGIEPVAREEYLVPIKKRKIELKDCSVSCKMELGLQFAA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05042 258 PIRSF AS2 142 258 IPR017414 -
Vivi2g05042 258 PIRSF AS2 1 166 IPR017414 -
Vivi2g05042 258 MobiDBLite consensus disorder prediction 128 185 - -
Vivi2g05042 258 MobiDBLite consensus disorder prediction 163 185 - -
Vivi2g05042 258 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vivi2g05042 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 189 - -
Vivi2g05042 258 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vivi2g05042 258 MobiDBLite consensus disorder prediction 128 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05042 Vivi-Chr2 171454860 171456358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05042 1 254 AS2 family AT3G02550 54.212 8.82e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g05042 LOB 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05042 - - aprc:113867933 349.747