Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05019 ATGGGCCGTGGAAGAATAACTATGGAACTCATTCAAAATGAGAAAGCAAGAAAGACAACCTTCCATAAGAGAAAGAATGGATTGTTGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATATTTGTGTAATTCTCTATGCTCCAAACTTTGAAGGTCAAGGATATGTTGAACCTGAAACATGGCCTAGAGACACGAAAGAGGTAGAAAGAATACTTGAAAAGTACTATAATACTACGAGCGATAGACGTCCTAAGATCTATGATGTTCATGAGTATTACAAAGAGAGAGTGAAAAAAATTGAATTTGAGGTTTCCAAAGTGCGCAAAGATAAGTTAAAGCTCATGTATCCAACTTGGGATCCATCTTTCGATTCTATTGGAGGGGAAGATTTGAGGCTACTTGCTAGAATATTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATTTTAAGGAAAAAGCAATAGCTCAAGAATCACACAAGGTTGATCAACTTATGAATGCTCCTTACATTGCTTCAAATTCAAGTAACTACTACAATCTCATGCAAAACAACATGCCTCAACCACAAATTTACCCTCCTCCATTGATGAATATTAATGATAAAAACCTAAACTCTTTAGGGTTTTTTCCATTTCAAATCGGGCAAAGCTCGCAGTCTTCTTCTATGCTTACCAACGCACAAGGTTGCTCATATCAGGTCGAGCCTGTGGAGAGTAGATATACGCAACCTTATCCATATAAGCAAATTGATGCTAATTGTACGAATTGGAGCAATCAAGTTAATGCTAATGTTACTTATGAACCAAGTATCGGTACGATGAAGAATAATGAAGCTGTTGAAAATAATGAAAACATGTTACCATACTATTACAATGGAAATGCTACGCAATCATATCCTATTGCTATGCATACTCTTCCTCATCAGAATCATCAAAACCTACCTCATGGATACCAACTTAATGGATTTTATGATATGGATTTTCTTCAAGGTCATCATATCTTCAACTATATGGATGGAAGGAAGTAG 1053 0.3561 MGRGRITMELIQNEKARKTTFHKRKNGLLKKVNEFSILCDVDICVILYAPNFEGQGYVEPETWPRDTKEVERILEKYYNTTSDRRPKIYDVHEYYKERVKKIEFEVSKVRKDKLKLMYPTWDPSFDSIGGEDLRLLARILDAKLDACNQKMNMLKGDFKEKAIAQESHKVDQLMNAPYIASNSSNYYNLMQNNMPQPQIYPPPLMNINDKNLNSLGFFPFQIGQSSQSSSMLTNAQGCSYQVEPVESRYTQPYPYKQIDANCTNWSNQVNANVTYEPSIGTMKNNEAVENNENMLPYYYNGNATQSYPIAMHTLPHQNHQNLPHGYQLNGFYDMDFLQGHHIFNYMDGRK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05019 350 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi2g05019 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 201 - -
Vivi2g05019 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g05019 350 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Vivi2g05019 350 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vivi2g05019 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g05019 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vivi2g05019 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g05019 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g05019 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05019 Vivi-Chr2 171120001 171121053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05019 1 220 Type I MADS-box Gene Family AT5G55690 35.268 3.32e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi2g05019 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05019 - - tpra:123913303 461.07