Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05012 ATGAATAATTCTGGAAAAGAAAAAGCATTGAATCTTGACACTAAGGACAAGCTTTATCTCCAATCTAATGCCTCCAAAGCTCCACCATCCCCCAAACAGCCTTTCTTCATTGGTGTTGCTGGTGGAACTGCATCGGGGAAAACAACTGTATGCAACTTGATAAACAGCCAGCTTCATGATCAACGTATTGTCCTCATTAATCAAGACTCATTTTACCACTCATTGAATGATGATATACTACAAAAAGTTAATGACTATAACTTTGATCATCCTGATGCATTTGATATAGAGCTTATGCTTTCTAGTATGGAGAAATTAAAACATGGGCAACCGGCTTCCATACCGAATTATAATATGAGTACTCGTAAGAGAATTGAACCTCCACGCCAGGTTCACCCCGCAGATATCATAGTTTTAGAGGGAATACTAGTTCTTCACGATTCTCGTGTTCGTGATCTTTTGAACATGAAGATCTTTGTTGACGAAGATTCTGATATTCGCCTAACGCGAAGGATTCAACGCCTCACAATTGAACATGGGAGAAACATTCAAAATGTTCTAGACCAATATTGCAGATTTGTAAAACCTAGTTTTGAAGATTTTGTTCTTCCAACAAAAAAATATGCTGATATTATCATACCTGGGGGAGGAGATAATGATGTTGCTATTGATTTGATAATTCAAAATATTCGTACAAAGCTTGGTCAACATGATTTGTGTAAAATATATCCCAATATTTTTGTCATTTTTTCTACTTTTCAGATCAAAGGAATGCATACTCTAATCCGTGATGTTGGAACTACAAAACATGATTTTGTATTTTATTCAGATCGTCTTATTAGATTGGTTGTTGAACATGGACTTGGTCACCTTCCTTTTACAGAAAAACAGGTCACAACACCAACAGGATCTGTATATTCTGGTGTGATTTTTTGTAGCAGATTGTGCGGAGTATCAGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTGAGAGCATGCTGTAAAGGAATCAAAATTGGTAAAATACTTATTCTTGGACATGGCACAGATGGAAGACAGTTAATCTATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTGTTGCTACTTGATCCTGTTCTAGCTACAGGAAGTTCTGCAGTGAAAGCTATCTCTCTACTTCTGAAGAAAGGTGTATTAGAATCAAACATCATCTTTTTAAATTTAATAGCAGCACCACAAGGAATAAATGCAGTTTGTGAGAGATTTCCAATGATGAAACTTGTAACATCGGAGATTGATGCAACGCTAAATGAGAGTTCTCGTGTGATCCCTGGATTAGGCGAGTTTGGTGATCGTTACTTTGCCACGGATGATTAG 1365 0.3692 MNNSGKEKALNLDTKDKLYLQSNASKAPPSPKQPFFIGVAGGTASGKTTVCNLINSQLHDQRIVLINQDSFYHSLNDDILQKVNDYNFDHPDAFDIELMLSSMEKLKHGQPASIPNYNMSTRKRIEPPRQVHPADIIVLEGILVLHDSRVRDLLNMKIFVDEDSDIRLTRRIQRLTIEHGRNIQNVLDQYCRFVKPSFEDFVLPTKKYADIIIPGGGDNDVAIDLIIQNIRTKLGQHDLCKIYPNIFVIFSTFQIKGMHTLIRDVGTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILILGHGTDGRQLIYEKLPSDIASRHVLLLDPVLATGSSAVKAISLLLKKGVLESNIIFLNLIAAPQGINAVCERFPMMKLVTSEIDATLNESSRVIPGLGEFGDRYFATDD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05012 454 PANTHER URIDINE KINASE 15 363 - -
Vivi2g05012 454 SUPERFAMILY PRTase-like 236 452 IPR029057 -
Vivi2g05012 454 Pfam Uracil phosphoribosyltransferase 251 452 - -
Vivi2g05012 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 226 IPR027417 -
Vivi2g05012 454 Gene3D - 244 453 IPR029057 -
Vivi2g05012 454 CDD PRTases_typeI 315 425 IPR000836 -
Vivi2g05012 454 NCBIfam uridine kinase 35 233 IPR000764 -
Vivi2g05012 454 Gene3D - 32 243 IPR027417 -
Vivi2g05012 454 FunFam Uridine kinase 30 236 - -
Vivi2g05012 454 CDD UMPK 36 233 IPR000764 -
Vivi2g05012 454 FunFam Uridine kinase 237 452 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 64 75 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 179 190 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 165 175 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 34 51 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 201 214 - -
Vivi2g05012 454 PRINTS Uridine kinase signature 109 124 - -
Vivi2g05012 454 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05012 Vivi-Chr2 171048266 171053474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05012 33 454 PRT Gene Family AT1G55810 73.286 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05012 K00876 - qsa:O6P43_008877 701.049