Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05008 ATGGGGACCAAGGCAAAGCAAGCTATGAAGAAGAGTTTGAAAAAGCTTAATGTTACTATTAAGCCAGCTGAGGGTGCTGATTTTTTGCCATTGGCAGGTGGTCCGGGTCGCAAACTTCCAGAACTTAAACCGTTGGAGAATACTTCCCCTGTTTTGTATATTGGTAGGATTCCACACGGGTTCTATGAGAAGGAGATGGAAGCTTATTTTGCACAATTTGGAACCATTAAGAGATTGAGAATTGCCAGAAATAAAAAGACCGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTTGAACACCTTCTTCAGGTGTATGTCGTACCTTCAGAAAATGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAGCCGTTGGACTCTCTCAAAATTGAACGAAAGCGACATGACAAGGAAAGAACATTGGAAGAACACAAAAAGCTGGTTGATAGGGTTATGAAACGCGATAAAAAGCGTTGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCCGAAATTGTGGGTAACTTCCATCTTGCTCCAAAGAAGATAAAGTTCGATGACTGA 633 0.3981 MGTKAKQAMKKSLKKLNVTIKPAEGADFLPLAGGPGRKLPELKPLENTSPVLYIGRIPHGFYEKEMEAYFAQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVVPSENVHPRLWKGFNYRYKPLDSLKIERKRHDKERTLEEHKKLVDRVMKRDKKRCKRIEAAGIDYECPEIVGNFHLAPKKIKFDD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05008 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vivi2g05008 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 209 - -
Vivi2g05008 210 CDD RRM_NIFK_like 51 123 - -
Vivi2g05008 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Vivi2g05008 210 Gene3D - 33 125 IPR012677 -
Vivi2g05008 210 SUPERFAMILY RNA-binding domain, RBD 51 196 IPR035979 GO:0003676
Vivi2g05008 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05008 Vivi-Chr2 171041780 171046372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05008 52 123 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 3.18e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05008 K14838 - gmx:100778780 338.191