Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05003 ATGGACAACAACGGGGAATCTGTTGGGGTTGATTTGAACAATCTTCACACTGATTCATCTGATGATGATTATAGTTGTGAGGAATCGGTTGGAACAGAGTTGTCAAATAGCCAAGCATTTGTAGGTGATAGTTTGGTGAGTTTAAATTCCATTACTTCGGATGAAATTCGTGCTATGGAATTTGGAACTGTGGAAGAAGCTTGTGAATTTTATTATAAGTATGGACGATGTAAAGGTTTTGCCATTAGGAAAAGCGATGTTAAACGAGGAGGGCCCGAAGGTAACAAAATAGTAGTGATGAGGCAGTTTGTATGTAACAAAAATGGATTAAGAGACAAGAAGCACTTGGCTAGGTCAGATAGGAAAAGAAAACACCGATGTACAACCCGCACTAGTTGCAAAGCTAGGCTCCATGTGCACTACAATAAGAAAAATGGGAAATATGTTGTGTCATTTTTTGAAGAGGCTCATAACCATGAGTTAACCCCGACAAAGTTTGTGCATTTACACCCCGGATATCGACATATATCTGAGGCAGATAGAGCTCAAATTGACAGTCTTCGATCACATGGTATCCGAACGTGTCATATAATGGGGTACATGGTTGCCCAAAAGGGTGGATATAATGATGTTTGTTTTACAAAGAAAGACTTGTACAATTATTCCGACAAAAAAATGCGTGATGTTGTTAAGAATGGTGATGTTGTTGCTGCCCTAAATTATCTCAAAGTGAAATCATCTACGGATCTTATACTTTATGCAGAATATTGTGTCAGTAGTGACGGAAGATTGAAGTCACTTTTTTGGGCAGACGGCCCTAGTAGATCGGACTATACATGTTTTGGGGATGTTCTTGCATTTGACACAACTTACAGGAAGAACAAATACAATTATCCTTTGGTTATATTTTCTTGTTACAACCACCACTCACAGACTGTTATATTCGGTGCGGCATTGGTGTCGGACGAAACGATAGAGACGTATAAGTGGTTGTTGAAGTGTTTCTTAGACTGCATGGAAAACAAATATCCAGAAGCAGTTGTAACAGATGGAGATGGTGCTATGAGGGAGGCTATAAAACAAATTTATCCTGATGCGACCCATCAGTTGTGTGCTTGGAATTTGAACAAGAATGCAGGTGAAAATGTAAAGAAGTCGCAATTTTTGGATGGTTTTAAAAAGGCAATGTACTCAAATTTTACAACAGAACAATTTGAAGAATTTTGGTGGGAGATGGTTAAAGAGAATGAACTTGAAGGAAATGCTTGGGTTGCCAAAACATATGAGACCAAGTCACTTTGGGCTACTGCATATCTACGCGATAAGTTTTTTGGTCGTATAAGAACTACGTCACAGTGCGAAGCTGTCAATGCTATAATCAAGTCTTATGTAAGGAAGAAAGGGTGCATTTTTGAATTTATGCATAACTTTGAACAAGCTTTGAGGGATTACAGAAATAATGAACTTGTTGCTGATTTTAAATCGAAGTTTTCAGATCCAGTGTTGACAACTCATCTTCGTCTGATCGAAAGTGACGCTGCCAAAACTTATACAGCAGAGATTTTCAAAGAAATAAAAGAAGAAATAATGAAGGCTGGTGCATTAATTGTAAAGGGGAGATTAATAAAAGGGGAACTGAGAGTTTATACATTGACAAAATATTGTGAGGATGGATATGAAAGAGAGGTTGTGTATGATCCTTCAGGTGAAACATTGCGGTGTTCGTGTAAATTGTTTGATTCTCGCGGAATTCCATGCTCACACATGTTTTACGTCATCAAAGAAGAGCATATGGATCATATTCCGCGTACTGTGGTATTGCCGCGTTGGACGAAGGATGCCAAAATTGGGTTTCTGAATATGGCTTTTTGCAAAGAAGTTTCAAAACAAAATGGTGTCTATGGGGATGTAATGGATGACATCCTGAAGCTGCAGATAAAGTATTGTAGTTCAGACGAACCAATTGGGACGCAAAATGCATTTGTAGGTGATCCAATGGCAGTGAAGAGAAAATGTGCTCCAAAGCGTAAAAAGAATGAATTCAAAACAATCAGACACTGCAAAAAATGCAACAGCACAGGTCATGATGCGAGGAATTGTTCGGACAAACAAGACAGAACATCTGAACAGAATGATGTGTTCGAGTCAATGTCGTTAAATGATTCTTCAAGCCAAATACTCAAGACAAATAAAGGGAAAAGGAAATCCAGCTGTAATATTAGCATTAGCAGGGGAAAACAATTTTCACGAACACGACAAAGTCAACGTGCTAATGTTACAACTACACCACAAAGTCAAGGTGCTAGCGTTGCAACTACACCACAAAGTCGAGGTGCTAACATTGCAACTACACCACATATGGATGTTAGAAGCAGAAATGTGGGTCCAATGATTGGACTTCAACCCTTGATGCCGGTGGGACAATCTGTAATTCATCAAATGCCCATGGGACAACCCATGTACCCAATGTATGGAATGCCTGTTTTGGATACTACATCGTGTTTCGGTCTGATGCAACATATGATGAAATTCGGTGGTAATCAATGA 2547 0.3899 MDNNGESVGVDLNNLHTDSSDDDYSCEESVGTELSNSQAFVGDSLVSLNSITSDEIRAMEFGTVEEACEFYYKYGRCKGFAIRKSDVKRGGPEGNKIVVMRQFVCNKNGLRDKKHLARSDRKRKHRCTTRTSCKARLHVHYNKKNGKYVVSFFEEAHNHELTPTKFVHLHPGYRHISEADRAQIDSLRSHGIRTCHIMGYMVAQKGGYNDVCFTKKDLYNYSDKKMRDVVKNGDVVAALNYLKVKSSTDLILYAEYCVSSDGRLKSLFWADGPSRSDYTCFGDVLAFDTTYRKNKYNYPLVIFSCYNHHSQTVIFGAALVSDETIETYKWLLKCFLDCMENKYPEAVVTDGDGAMREAIKQIYPDATHQLCAWNLNKNAGENVKKSQFLDGFKKAMYSNFTTEQFEEFWWEMVKENELEGNAWVAKTYETKSLWATAYLRDKFFGRIRTTSQCEAVNAIIKSYVRKKGCIFEFMHNFEQALRDYRNNELVADFKSKFSDPVLTTHLRLIESDAAKTYTAEIFKEIKEEIMKAGALIVKGRLIKGELRVYTLTKYCEDGYEREVVYDPSGETLRCSCKLFDSRGIPCSHMFYVIKEEHMDHIPRTVVLPRWTKDAKIGFLNMAFCKEVSKQNGVYGDVMDDILKLQIKYCSSDEPIGTQNAFVGDPMAVKRKCAPKRKKNEFKTIRHCKKCNSTGHDARNCSDKQDRTSEQNDVFESMSLNDSSSQILKTNKGKRKSSCNISISRGKQFSRTRQSQRANVTTTPQSQGASVATTPQSRGANIATTPHMDVRSRNVGPMIGLQPLMPVGQSVIHQMPMGQPMYPMYGMPVLDTTSCFGLMQHMMKFGGNQ 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05003 848 ProSiteProfiles Zinc finger CCHC-type profile. 687 700 IPR001878 GO:0003676|GO:0008270
Vivi2g05003 848 MobiDBLite consensus disorder prediction 1 15 - -
Vivi2g05003 848 ProSiteProfiles WRKY domain profile. 122 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g05003 848 MobiDBLite consensus disorder prediction 692 710 - -
Vivi2g05003 848 Pfam SWIM zinc finger 569 589 IPR007527 GO:0008270
Vivi2g05003 848 Pfam FAR1 DNA-binding domain 69 162 IPR004330 -
Vivi2g05003 848 MobiDBLite consensus disorder prediction 692 781 - -
Vivi2g05003 848 Pfam MULE transposase domain 284 378 IPR018289 -
Vivi2g05003 848 SMART 26again6 572 599 IPR006564 GO:0008270
Vivi2g05003 848 PANTHER OS01G0519700 PROTEIN 55 618 - -
Vivi2g05003 848 ProSiteProfiles Zinc finger SWIM-type profile. 559 597 IPR007527 GO:0008270
Vivi2g05003 848 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g05003 848 MobiDBLite consensus disorder prediction 711 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05003 Vivi-Chr2 170971064 170980725 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi2g05003 MULE 1.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05003 - - vvo:131650638 1720.67