Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04996 ATGAGTTCACTTTCATGGTTCTTTATTCTTTTTGCTCTTTCTATTCTAACTTCAAATTTTGTTTCATCCTCTGCAGTTCAAGACCCTGAACTAGTTGTACAAGATGTGCAAAGGAGCATCAATGCCTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACAGGCAACCCAATTGATGATTGTTGGAGATGTGATCCAAATTGGCAAAACAACAGACAAAGGCTAGCAGATTGTGCAATAGGATTTGGCAAAGACGCAATCGGCGGAAAAAATGGTAAAATCTACATCGTCACAGATTCAGGTGACGATGATCCTGTAAACCCTAAACCCGGAACTCTAAGATATGCCACAATCCAAGACGAACCATTATGGATAATTTTCCAAAGAGACATGGTAATCACATTAAAACAAGAAATCTTAGTAAACTCGTACAAAACAATTGATGGAAGAGGTGCAAATGTTCACATAGCAAATGGTGGATGTGTGACAATACATTATGTTAACAACGTTATAATACATGGTATTAATGTTCATGATTGTAAACCATTAGGGAACACTAACATAAGGGATTCACCAGAACATAGTGGCTTTTGGACAGTTTCTGATGGTGATGGAATTTCTGTGTTTAATTCACAACATGTTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGACTTATTGATGTTATTCATGGATCAACAGCTATTACTATTTCGAATAATTATATGACTCATCATGATAAGGTTATGCTTTTGGGACATAGTGATTCTTATGTGCAAGATAAGGATATGCAAGTTACTATTGCTTTTAATCATTTTGGTGAAGGACTTGTCCAAAGAATGCCAAGGTGTAGACATGGTTATTTCCATGTGGTAAACAATGATTATACACATTGGGAAATGTATGCAATCGGAGGAAGTGCAAACCCTACAATCAACAGCCAAGGAAACAGATTTCTTGCACCAAACAACAGGTTTAGCAAAGAAGTAACAAAACATGAAGATGCTCCGGAAAGTGAATACAATAGTTGGAATTGGAGATCAGAAGGTGATTTGTTCTTAAATGGAGCATTCTTTAGACAAACTGGTGCTGCTGCTTCTTCTTCTATCTATGCTAGGGCTTCAAGTCTTAGTGCTAGACCAGCTTCTCTTGTTGGTTCAATTACTTCGACTTCGGGTGTGCTTAATTGTAAGAAGGGCGCACGTTGCTGA 1218 0.3752 MSSLSWFFILFALSILTSNFVSSSAVQDPELVVQDVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWQNNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPKPGTLRYATIQDEPLWIIFQRDMVITLKQEILVNSYKTIDGRGANVHIANGGCVTIHYVNNVIIHGINVHDCKPLGNTNIRDSPEHSGFWTVSDGDGISVFNSQHVWIDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYVQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNNRFSKEVTKHEDAPESEYNSWNWRSEGDLFLNGAFFRQTGAAASSSIYARASSLSARPASLVGSITSTSGVLNCKKGARC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04996 405 PANTHER PECTATE LYASE 18-RELATED 22 402 IPR045032 GO:0030570
Vivi2g04996 405 Gene3D - 55 398 IPR012334 -
Vivi2g04996 405 FunFam Pectate lyase 55 398 - -
Vivi2g04996 405 SMART amb_all 130 327 IPR002022 -
Vivi2g04996 405 Pfam Pectate lyase 136 321 IPR002022 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vivi2g04996 405 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vivi2g04996 405 SUPERFAMILY Pectin lyase-like 56 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04996 Vivi-Chr2 170853896 170856531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04996 2 405 Polysaccharide Lyase AT5G63180 72.236 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04996 K01728 - gmx:100794814 741.11