Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04980 ATGGGGCAGGAGAGTCTGAGCCCCGAGGATTCATCTGTTGCAGACAGTAACGTGGTTGTCGGTAAAGAAAATGATTGTCTAAGCGCAAATGCTTCTCCTGTTGGCCCTACTCAGATGGAAATTAATGATGAATGTCAGACCTCAAATATTTCCAATGAAGACCATTTTCGTATTGACGTTGGTAGAGGACAGCAGTGTCAGAACCCCGACTCAACCTCTATATCCGTGACCAATACTGATGTAACGAACGAGGAGGAAACATACGTGGCACCAAATATCGACATGGAGTTTGAATCAGAAGACCATGCTTACAAATGTTATAACAAGTACGCTATTCTGAAAGGTTTCAGCGTAAGAAAGGATTTCATCAACAAGAGTCGGATAGATGGTTCTGTGGTGTCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGTCCTAACAAAGATTATATAAATCCAAAGAAATCTCAACAAGAAACAAGGACCGGTTGCTTGGCACACATGACTATTTCTCGTCAAACAAATGGCAAGTTTCGTGTCACGAGTTTCGAAGCAGAACACAATCACGAGTTTGTAACACCCGGTATTGCTTATATGCTGCCATCACAGAAAAAACTGAGTTTTTCTCACGCTGTTGAAGTGAACGTAACCGAGTCCAGGTTGGATGGAGTACCGAAACTGGGAATGGGATTTTATTCAGAGGAGCATGCTTATGAATTTTATAATTCATATGCTGCACAAGTAGGTTTCAGTGTGAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTGGCATCGAGAAGATTTACTTGCTTCAGAGAAGGTTTCCGGCAGAAAGAGAAGCGAGTCATGAATGGAAAGAGACCTCGGAAGGATACAAGGATTGGATGTTTAGCACAGATGATTATTTCTCGTCAGCCGGATGGCAAGTATCATATAACTCATTTTGAAGAAAAACACAATCACGAGCTTGTTGCTGCGTGTAGAGTTCATACGTTAAGATCACAGAAGAGACTAGCTGCAACTCGAGTTGAAGACAGTATTGTCAATGGATGCAACGTGCTGCCCAAGCCGGTTGAAGGTTTTCATGATCGGGATTACGATCCTGTGGATAGTGAATATCAACTACCTTTCAAATGCAAACGAGAAATAAAAGAGGAAGAAATCGAAAAGATTAGGCACTACTTTCAAAACAAGCAATCAAAGAATCCTCCTTTCTTTTATGCTTTCCAGCTTGATGCTGAGAATCGAATAACAAATATATTTTGGGCTGATGCAAAGATGATAGTTGATTACAGTGACTTTGGTGATGTTGTTTGTTTTGATACGAGTTATAAATTTTATAATGACTCGCGCCCGTTTGCTCCATTTCTTGGTATAAATAATCACAGGCAAATGATTATCTTTGGGGCTGCACTTCTATACGACGAATCTGTCGAATCTTTTAAGTGGCTGTTTCATGTTTTCATTGAGGCTATGTCTGGAACCAAGCCGAAGACAATCTTAAGAGATCAAGATCCAATAATAGCTGAAGCTATTAATTCCGTGTTTCCTCAAACAAATCAGCGAGTTTGTGTGTGGCATGTCTATCAAGACGCGCTCAAGCAACTTAATCATGTGTCTGTTAAATCCGATTCTTTCGTAAATGATTTGAGCAGCTGCTTTTTTAATCATGAGGAAGAGGATTTTGTTATTGCATGGAATGCTTTCATGGACAAGTATAATCTGTCAGAAAACGAATGGTTGCGTCAAATATACGAAAGCAGAAACCAATGGGCCATTGCTTACGGACGGCATATTTTTTGTGCCGACATAGTAAGCTTGCTTGTGCGAGAAAATCTTATCGGAAACCTGAAAAAACACCTCAAGAATAACGACTCTGGAGTTCTTCCATTTCTCAAGCATCTTGGGAAGCTTGTGGCTGATTGGCACTACAAAGAATTAGAAGCTAATTATGACACGAGCCGGCAAATGCCAGCTCTAATGGGCGATATCGTTACATTAAAGCGTGCAAGAGAACCATACACACCAAAGGTATTCGAGTTATTCCAGAAAGAATATGAAGCATGCTTAAACCTAGTGCTAAAGCTTTGTAGTGAGAATGGATCATTGTATAATTATAAAGTTAGTATATACGAACAAGTCCGAGAGTATACGGTTAGTTTCGATTCGTCTGATGCGACAATCTGTTGCAGCTGTATGAAGTTTGAGTGTGTGGGAGTCTTGTGCTGCCATGCATTAAAGGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCAAGTATATCTTAAAGAGATGGACAAAAGATGCTAGAAGATAG 2328 0.4021 MGQESLSPEDSSVADSNVVVGKENDCLSANASPVGPTQMEINDECQTSNISNEDHFRIDVGRGQQCQNPDSTSISVTNTDVTNEEETYVAPNIDMEFESEDHAYKCYNKYAILKGFSVRKDFINKSRIDGSVVSRRFTCHRQGFRPNKDYINPKKSQQETRTGCLAHMTISRQTNGKFRVTSFEAEHNHEFVTPGIAYMLPSQKKLSFSHAVEVNVTESRLDGVPKLGMGFYSEEHAYEFYNSYAAQVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKEKRVMNGKRPRKDTRIGCLAQMIISRQPDGKYHITHFEEKHNHELVAACRVHTLRSQKRLAATRVEDSIVNGCNVLPKPVEGFHDRDYDPVDSEYQLPFKCKREIKEEEIEKIRHYFQNKQSKNPPFFYAFQLDAENRITNIFWADAKMIVDYSDFGDVVCFDTSYKFYNDSRPFAPFLGINNHRQMIIFGAALLYDESVESFKWLFHVFIEAMSGTKPKTILRDQDPIIAEAINSVFPQTNQRVCVWHVYQDALKQLNHVSVKSDSFVNDLSSCFFNHEEEDFVIAWNAFMDKYNLSENEWLRQIYESRNQWAIAYGRHIFCADIVSLLVRENLIGNLKKHLKNNDSGVLPFLKHLGKLVADWHYKELEANYDTSRQMPALMGDIVTLKRAREPYTPKVFELFQKEYEACLNLVLKLCSENGSLYNYKVSIYEQVREYTVSFDSSDATICCSCMKFECVGVLCCHALKVLDYRNIRIVPSKYILKRWTKDARR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04980 775 SMART 26again6 731 758 IPR006564 GO:0008270
Vivi2g04980 775 Pfam FAR1 DNA-binding domain 107 192 IPR004330 -
Vivi2g04980 775 Pfam FAR1 DNA-binding domain 239 327 IPR004330 -
Vivi2g04980 775 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 79 209 IPR031052 GO:0006355
Vivi2g04980 775 ProSiteProfiles Zinc finger SWIM-type profile. 720 756 IPR007527 GO:0008270
Vivi2g04980 775 Pfam MULE transposase domain 440 533 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04980 Vivi-Chr2 170494790 170498563 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi2g04980 MULE 4.1e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04980 K17604 - tpra:123911704 1343.18