Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04928 ATGAATGATGTTCCAATTCGATCATCTCCCAGTACCACTAACCATGGCACTGAGGTTGATGTTAGTGGAACTCGAGAAATGTGTGATGTTCCAATTCAATCAGTTTCCCTCACCAACAACATGGAGTTTGATTCCTCTTCAACACAAAACAATGTTGGTGGAAAAACATGCCACCAGTGTCGTCAAATAATCAAAGATGTTGCTGCAATCTGTAAAAATCCAAGGAATGGGAAGCCATGTGTAAACAAGGTTTGCCAAAAATGCCTCAAAAATAGATATGGGGAAATGGTAAATGAGGTAAATTCTTTGACTGATTGGAATTGTCCGAAGTGCAGGGGAATTTGTAATTGTAGTTGTTGCAGGAGAAACAATGGTCTAGAACCTACTGGTGCTCTATCTAATACAGCAAAGGCATCCGGTTTCAAATCAGTGTCAGAAATGCTTATCAATGAGGAGTCAATGGATTTCGAATTGAACAAGGTTAATAATGTGGATGTTGTGCCTTCACATGAAGCAACTTTGGGAAATGATCTTATACTAGATCCATCTGCTATTAATGATACTGAAGGTGGTATTTCAAGTATGGACATTGAACAACATCCAAATGTCGGGAAAGGTGTTGTAGATACTAAAATAGTTGAGAAAGAAATTCCTTTGCCTACTGCCACAGAGATTACAGCAATATTAGACATTGAGCTTCGACCGGAAGATGTTGGAAATGCATTGCAGTTTCTAGAATTTTGCCGAGTGTTTGGAGAGGCGCTCGATATCGAGAAAGGAGAAGGTGAAGCAATTTTACAATCATTGATACGTAAACAAAATGTGTGTCAAGGTGAAAGCACCTTAGTTGTTGAACTCCAAAGCAAACTGTTGACTCTGATAGTATCTGATTCAAGAACTAAGTCCCCATCCTTAACTACTAGTGATGGAAATAATTCATGGTTGAAAATTCTGCAAGATTTAATAATTAAATCTGATCTTGTTCTAAAAGAATTTCCCATAGATTGGCTTAATGAAGGCATTGGTGGATATTATGATTTGGATATATCTAAAAAGCTTACCCTTTTGAATTTTATTTGTGATGAAGCACTGGGCACTACGAAACTAAGGAGTTATATTGATGATCAAAATGTAAAATATGCTGAAAAAAAGAAAGAAGCTAAATGCAAAGTTGCTGCAGCTAAGGAGAAGGAAAAGAGTCTTAAGAAAAATTTGCGGGATGAAATGGAAAAAGATGCTATGTCAAATGTGGATAGACTTTCGATATCAGAACCTAATGAACTTATTGTAACACTAAAAAGTGAAGCATCCAAAGCTCACACCGAGTTTCTTGAGGCAAAAGACGCAATTTCTAAATGGAAACAAAGTTCAGATGCTATCAGAATTGAGCCTGAGTTCTCCAATAGTAGTGGTCAATCATTTTGGAAGTTAAAGAGTTATAATAGTGAATGTGATCTCTTAATGCAAGATATCACATTAAAGCAAGAGGATGCGACTCTTGCCGAAGAAAAATGGCTTTTTTATGGTCCTGAACAGAAGGATGAGATTGATATGTACATTAATTCAAGAACTAAAAGAAATGAGTGA 1587 0.3661 MNDVPIRSSPSTTNHGTEVDVSGTREMCDVPIQSVSLTNNMEFDSSSTQNNVGGKTCHQCRQIIKDVAAICKNPRNGKPCVNKVCQKCLKNRYGEMVNEVNSLTDWNCPKCRGICNCSCCRRNNGLEPTGALSNTAKASGFKSVSEMLINEESMDFELNKVNNVDVVPSHEATLGNDLILDPSAINDTEGGISSMDIEQHPNVGKGVVDTKIVEKEIPLPTATEITAILDIELRPEDVGNALQFLEFCRVFGEALDIEKGEGEAILQSLIRKQNVCQGESTLVVELQSKLLTLIVSDSRTKSPSLTTSDGNNSWLKILQDLIIKSDLVLKEFPIDWLNEGIGGYYDLDISKKLTLLNFICDEALGTTKLRSYIDDQNVKYAEKKKEAKCKVAAAKEKEKSLKKNLRDEMEKDAMSNVDRLSISEPNELIVTLKSEASKAHTEFLEAKDAISKWKQSSDAIRIEPEFSNSSGQSFWKLKSYNSECDLLMQDITLKQEDATLAEEKWLFYGPEQKDEIDMYINSRTKRNE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04928 528 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 342 374 IPR028942 -
Vivi2g04928 528 ProSiteProfiles DDT domain profile. 235 300 IPR018501 -
Vivi2g04928 528 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g04928 528 PANTHER OS05G0300700 PROTEIN 47 454 IPR040221 GO:0006355
Vivi2g04928 528 Pfam DDT domain 236 297 IPR018501 -
Vivi2g04928 528 Coils Coil 377 411 - -
Vivi2g04928 528 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 52 148 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04928 Vivi-Chr2 169549093 169553712 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi2g04928 zf-4CXXC_R1 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04928 - - vvo:131624331 938.332